Mercurial > repos > lecorguille > xcms_xcmsset
diff abims_xcms_xcmsSet.xml @ 30:14b1c52fae62 draft
"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
author | workflow4metabolomics |
---|---|
date | Wed, 12 Feb 2020 08:30:58 -0500 |
parents | 793f87231d49 |
children | eb15a3841da4 |
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--- a/abims_xcms_xcmsSet.xml Tue Jan 07 08:16:02 2020 -0500 +++ b/abims_xcms_xcmsSet.xml Wed Feb 12 08:30:58 2020 -0500 @@ -1,4 +1,4 @@ -<tool id="abims_xcms_xcmsSet" name="xcms findChromPeaks (xcmsSet)" version="@WRAPPER_VERSION@.2"> +<tool id="abims_xcms_xcmsSet" name="xcms findChromPeaks (xcmsSet)" version="@TOOL_VERSION@+galaxy0"> <description>Chromatographic peak detection</description> <macros> @@ -224,7 +224,7 @@ <param name="ppm" value="25" /> <param name="peakwidth" value="20,50" /> </conditional> - <expand macro="test_file_load_single_ko15"/> + <expand macro="test_file_load_single_file" filename="ko15"/> <assert_stdout> <has_text text="ppm: 25" /> <has_text text="peakwidth: 20, 50" /> @@ -235,6 +235,7 @@ <has_text text="Peak Groups: 0" /> <has_text text="Sample classes: ." /> </assert_stdout> + <!--<output name="xsetRData" file="ko15-xset.RData" />--> </test> <!-- DISABLE FOR TRAVIS Useful to generate test-data for the further steps @@ -245,6 +246,7 @@ <param name="ppm" value="25" /> <param name="peakwidth" value="20,50" /> </conditional> + <expand macro="test_file_load_single_file" filename="ko16"/> <assert_stdout> <has_text text="object with 1 samples" /> <has_text text="Time range: 2521.7-4477.9 seconds (42-74.6 minutes)" /> @@ -253,6 +255,7 @@ <has_text text="Peak Groups: 0" /> <has_text text="Sample classes: ." /> </assert_stdout> + <output name="xsetRData" file="ko16-xset.RData" /> </test> <test> <param name="image" value="wt15-raw.RData" ftype="rdata" /> @@ -261,6 +264,7 @@ <param name="ppm" value="25" /> <param name="peakwidth" value="20,50" /> </conditional> + <expand macro="test_file_load_single_file" filename="wt15"/> <assert_stdout> <has_text text="object with 1 samples" /> <has_text text="Time range: 2517-4473.2 seconds (42-74.6 minutes)" /> @@ -269,6 +273,7 @@ <has_text text="Peak Groups: 0" /> <has_text text="Sample classes: ." /> </assert_stdout> + <output name="xsetRData" file="wt15-xset.RData" /> </test> <test> <param name="image" value="wt16-raw.RData" ftype="rdata" /> @@ -277,6 +282,7 @@ <param name="ppm" value="25" /> <param name="peakwidth" value="20,50" /> </conditional> + <expand macro="test_file_load_single_file" filename="wt16"/> <assert_stdout> <has_text text="object with 1 samples" /> <has_text text="Time range: 2521.7-4468.5 seconds (42-74.5 minutes)" /> @@ -285,6 +291,7 @@ <has_text text="Peak Groups: 0" /> <has_text text="Sample classes: ." /> </assert_stdout> + <output name="xsetRData" file="wt16-xset.RData" /> </test> --> <!-- DISABLE FOR TRAVIS @@ -485,14 +492,13 @@ .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS +@HELP_XCMS_NEWVERSION_3610@ + **Version 3.4.4.1 - 30/04/2019** - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. -**Version 3.4.4.0 - 08/02/2019** - -- UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_) - +@HELP_XCMS_NEWVERSION_3440@ **Version 3.0.0.0 - 08/03/2018**