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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:14:02 -0400
parents 0888f7ef739a
children 53923784176c
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# Example of planemo command to launch test

# Note: --galaxy_branch "dev" is set to deal with zip file


# -- Use of installed package environments
# after having installing package on a local galaxy instance
source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
planemo test --install_galaxy --galaxy_branch "dev"

#All 2 test(s) executed passed.
#abims_xcms_xcmsSet[0]: passed
#abims_xcms_xcmsSet[1]: passed


# -- Use of conda dependencies
planemo conda_init --conda_prefix /tmp/mc
planemo conda_install --conda_prefix /tmp/mc . 
planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev"

#All 2 test(s) executed passed.
#abims_xcms_xcmsSet[0]: passed
#abims_xcms_xcmsSet[1]: passed


# -- Use of shed_test
planemo shed_test --install_galaxy  -t testtoolshed --galaxy_branch ="dev"

#All 2 test(s) executed passed.
#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_xcmsset/2.0.8[0]: passed
#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_xcmsset/2.0.8[1]: passed