Mercurial > repos > lgueguen > sartools
comparison make_html.py @ 0:581d217c7337 draft
Planemo upload
| author | lgueguen |
|---|---|
| date | Fri, 22 Jul 2016 05:39:13 -0400 |
| parents | |
| children | 05c9b1a7f44e |
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| -1:000000000000 | 0:581d217c7337 |
|---|---|
| 1 #Author: Loraine Gueguen | |
| 2 | |
| 3 import sys | |
| 4 import os | |
| 5 import time | |
| 6 import argparse | |
| 7 | |
| 8 def getfSize(fpath,outpath): | |
| 9 """ | |
| 10 format a nice file size string | |
| 11 """ | |
| 12 size = '' | |
| 13 fp = os.path.join(outpath,fpath) | |
| 14 if os.path.isfile(fp): | |
| 15 size = '0 B' | |
| 16 n = float(os.path.getsize(fp)) | |
| 17 if n > 2**20: | |
| 18 size = '%1.1f MB' % (n/2**20) | |
| 19 elif n > 2**10: | |
| 20 size = '%1.1f KB' % (n/2**10) | |
| 21 elif n > 0: | |
| 22 size = '%d B' % (int(n)) | |
| 23 return size | |
| 24 | |
| 25 # Define option | |
| 26 parser = argparse.ArgumentParser(description='Create an html page for downloading files from a directory') | |
| 27 parser.add_argument('--tool', help='Galaxy tool', required=True) | |
| 28 parser.add_argument('--output_type', help='figures or tables', required=True) | |
| 29 parser.add_argument('--output_dir', help='Output directory', required=True) | |
| 30 parser.add_argument('--output_html', help='Output HTML file name', default='', required=True) | |
| 31 | |
| 32 #Parse the command line | |
| 33 args = parser.parse_args() | |
| 34 tool=args.tool | |
| 35 output_type=args.output_type | |
| 36 output_dir=args.output_dir | |
| 37 output_html=args.output_html | |
| 38 | |
| 39 | |
| 40 debut_html="""<!DOCTYPE html> | |
| 41 <html> | |
| 42 <head> | |
| 43 <meta charset="utf-8" /> | |
| 44 <title></title> | |
| 45 </head> | |
| 46 <body> | |
| 47 <h1>Galaxy Tool %s</h1> | |
| 48 """ %(tool) | |
| 49 | |
| 50 fin_html="</body></html>" | |
| 51 | |
| 52 html=debut_html | |
| 53 run_date=time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time())) | |
| 54 html+='<div>Run at %s</div><br/>\n'%run_date | |
| 55 html+='<div><strong>%s</strong> available for downloading</div><br/>\n'%output_type | |
| 56 | |
| 57 | |
| 58 flist = os.listdir(output_dir) | |
| 59 flist.sort() | |
| 60 | |
| 61 | |
| 62 html+='<div><table cellpadding="3" cellspacing="3"><tr><th>Output File Name (click to view)</th><th>Size</th></tr>\n' | |
| 63 | |
| 64 for f in flist : | |
| 65 size=getfSize(f,output_dir) | |
| 66 html+='<tr><td><a href="%s">%s</a></td><td>%s</td></tr>\n'%(f,f,size) | |
| 67 html+='</table></div><br/>\n' | |
| 68 | |
| 69 html+=fin_html | |
| 70 | |
| 71 htmlf = file(output_html,'w') | |
| 72 htmlf.write(html) | |
| 73 htmlf.close() |