Mercurial > repos > lgueguen > sartools

comparison abims_sartools_edger_wrapper.py @ 4:05c9b1a7f44e draft default tip

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Uploaded new release 1.7.3
author lgueguen
date Thu, 07 Jan 2021 11:12:01 +0000
parents de6d0b7c17af
children
comparison
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3:de6d0b7c17af 4:05c9b1a7f44e
61 tables_html_files_path=args.tables_html_files_path 61 tables_html_files_path=args.tables_html_files_path
62 rdata=args.rdata 62 rdata=args.rdata
63 report_html=args.report_html 63 report_html=args.report_html
64 log=args.log 64 log=args.log
65 #Print the parameters selected 65 #Print the parameters selected
66 print("Wrapper arguments: %s") %(args) 66 print("Wrapper arguments: %s" %(args))
67 67
68 #Get the working directory path 68 #Get the working directory path
69 working_directory = os.getcwd() 69 working_directory = os.getcwd()
70 #Get the script directory path 70 #Get the script directory path
71 script_directory=os.path.dirname(os.path.realpath(__file__)) 71 script_directory=os.path.dirname(os.path.realpath(__file__))
94 if colors: 94 if colors:
95 cmd+="--colors %s " % (colors) 95 cmd+="--colors %s " % (colors)
96 if forceCairoGraph: 96 if forceCairoGraph:
97 cmd+="--forceCairoGraph %s " % (forceCairoGraph) 97 cmd+="--forceCairoGraph %s " % (forceCairoGraph)
98 cmd+="> %s 2>&1" % (log) 98 cmd+="> %s 2>&1" % (log)
99 print("Rscript command: %s") % (cmd) 99 print("Rscript command: %s" % (cmd))
100 os.system(cmd) 100 os.system(cmd)
101 101
102 #Get output files 102 #Get output files
103 os.mkdir(figures_html_files_path) 103 os.mkdir(figures_html_files_path)
104 os.mkdir(tables_html_files_path) 104 os.mkdir(tables_html_files_path)