diff test-data/SARTools_edgeR_T4vsT0.complete.txt @ 0:581d217c7337 draft

Planemo upload
author lgueguen
date Fri, 22 Jul 2016 05:39:13 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/SARTools_edgeR_T4vsT0.complete.txt	Fri Jul 22 05:39:13 2016 -0400
@@ -0,0 +1,10161 @@
+Id	T0.1	T0.5	T0.6	T4.1	T4.2	T4.3	T8.1	T8.2	T8.3	norm.T0-1	norm.T0-5	norm.T0-6	norm.T4-1	norm.T4-2	norm.T4-3	norm.T8-1	norm.T8-2	norm.T8-3	baseMean	T0	T4	T8	FC	log2FoldChange	pvalue	padj	tagwise.dispersion	trended.dispersion
+CADAFUBG00000001	151	131	183	31	35	44	19	31	18	108	102	116	39	49	41	27	41	26	60.93	109	43	31	0.397	-1.334	1.36665872601496e-10	1.93749011734949e-10	0.0155	0.0215
+CADAFUBG00000002	142	134	153	650	629	783	136	241	151	101	104	97	823	883	736	195	317	215	385.58	101	814	242	8.073	3.013	2.34003981294871e-50	6.75976542940545e-50	0.0225	0.0213
+CADAFUBG00000003	157	147	166	7	10	20	8	10	8	112	114	105	9	14	19	11	13	11	45.41	110	14	12	0.13	-2.94	2.46745420958502e-31	5.23975821032212e-31	0.0154	0.0179
+CADAFUBG00000004	275	249	342	70	44	91	75	64	62	197	193	216	89	62	86	107	84	88	124.59	202	79	93	0.392	-1.349	1.48620942553932e-11	2.15824329217387e-11	0.0198	0.0284
+CADAFUBG00000005	4	5	2	0	0	1	2	2	3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000006	2	0	1	0	1	2	7	3	3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000007	4	7	3	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000008	10	16	10	28	12	10	16	33	23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000009	12	20	24	74	84	77	10	10	9	9	16	15	94	118	72	14	13	13	40.39	13	95	13	7.086	2.825	2.27366323098506e-25	4.34026250712697e-25	0.0246	0.0146
+CADAFUBG00000010	269	262	379	112	132	138	44	33	48	192	203	239	142	185	130	63	43	68	140.69	211	152	58	0.718	-0.478	0.0238826887252737	0.0265968416359987	0.0266	0.0288
+CADAFUBG00000011	10065	9593	11955	4076	3739	4137	2736	3311	2749	7192	7439	7549	5161	5246	3890	3919	4350	3916	5406.87	7393	4766	4062	0.642	-0.64	3.18294251780728e-06	4.04348972624327e-06	0.0133	0.0144
+CADAFUBG00000012	651	566	819	101	86	74	97	87	96	465	439	517	128	121	70	139	114	137	236.6	474	106	130	0.219	-2.19	5.58760572747453e-23	1.01737041571856e-22	0.0274	0.0265
+CADAFUBG00000013	118	116	150	18	24	42	15	8	5	84	90	95	23	34	39	21	11	7	44.9	90	32	13	0.361	-1.469	9.9328152239492e-11	1.41258669592288e-10	0.0173	0.0175
+CADAFUBG00000014	288	238	304	6	6	8	2	7	3	206	185	192	8	8	8	3	9	4	69.13	194	8	5	0.041	-4.613	2.14680948817996e-60	7.19566331568588e-60	0.0182	0.0236
+CADAFUBG00000015	18	31	39	4	4	7	2	6	2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000016	1	0	0	1	1	0	2	0	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000017	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000018	1	1	2	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000019	2	3	0	0	1	0	0	0	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000020	0	0	0	1	1	2	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000021	4	1	4	1	0	0	0	2	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000022	1	0	2	0	0	0	0	1	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000023	0	1	1	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000024	7	9	5	244	181	308	159	177	173	5	7	3	309	254	290	228	233	246	174.93	5	284	236	56.27	5.814	1.31348290679221e-97	7.42636322432382e-97	0.0196	0.0287
+CADAFUBG00000025	2	1	0	35	25	38	17	29	22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000026	602	535	669	1453	1042	1911	264	733	246	430	415	422	1840	1462	1797	378	963	350	895.29	422	1700	564	4.022	2.008	4.68946180741454e-12	6.87499740240882e-12	0.0555	0.0139
+CADAFUBG00000027	20	16	18	1	1	1	1	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000028	116	118	123	86	82	78	37	55	48	83	91	78	109	115	73	53	72	68	82.55	84	99	64	1.165	0.221	0.30193115238966	0.316979761011084	0.0226	0.0249
+CADAFUBG00000029	21	23	29	2	2	1	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000030	6	6	11	3	2	2	12	11	13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000031	110	95	113	175	161	365	289	338	348	79	74	71	222	226	343	414	444	496	263.12	75	264	451	3.504	1.809	5.42066505139816e-20	9.31703909034316e-20	0.0205	0.0257
+CADAFUBG00000032	17	23	25	49	48	51	12	19	14	12	18	16	62	67	48	17	25	20	31.69	15	59	21	3.803	1.927	3.37357634885692e-15	5.28096814974069e-15	0.0129	0.0114
+CADAFUBG00000033	275	227	280	19	13	16	30	17	56	197	176	177	24	18	15	43	22	80	83.53	183	19	48	0.104	-3.267	6.11140250656632e-20	1.0495881922748e-19	0.0585	0.0255
+CADAFUBG00000034	18	13	22	87	96	131	339	102	457	13	10	14	110	135	123	486	134	651	186.17	12	123	424	9.871	3.303	3.74316508765983e-13	5.62882952989476e-13	0.1055	0.0285
+CADAFUBG00000035	14	6	10	43	51	45	228	125	352	10	5	6	54	72	42	327	164	501	131.29	7	56	331	7.827	2.969	1.99222920335073e-11	2.88138972965268e-11	0.0843	0.0284
+CADAFUBG00000036	23	22	29	3	4	12	4	5	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000037	233	233	289	6	5	7	4	4	11	166	181	182	8	7	7	6	5	16	64.17	176	7	9	0.04	-4.64	1.14340365761801e-56	3.63402774910104e-56	0.0191	0.0227
+CADAFUBG00000038	64732	59582	73960	669	438	796	514	444	376	46254	46201	46704	847	615	748	736	583	536	15913.88	46386	737	618	0.016	-5.979	8.15350902550011e-240	4.17090812887785e-238	0.015	0.0158
+CADAFUBG00000039	2528	2347	3074	85	65	111	298	204	384	1806	1820	1941	108	91	104	427	268	547	790.29	1856	101	414	0.055	-4.195	2.58394994136683e-79	1.13067544786693e-78	0.0246	0.0145
+CADAFUBG00000040	3479	3303	4246	748	606	1016	692	551	673	2486	2561	2681	947	850	955	991	724	959	1461.66	2576	917	891	0.356	-1.488	8.10390167480585e-27	1.58464006810652e-26	0.0126	0.0128
+CADAFUBG00000041	2612	2445	3134	567	503	531	643	610	579	1866	1896	1979	718	706	499	921	801	825	1134.62	1914	641	849	0.331	-1.593	2.39300957864237e-28	4.80166339454881e-28	0.0133	0.0132
+CADAFUBG00000042	4933	3928	4716	5763	6014	8472	10757	8109	11172	3525	3046	2978	7297	8438	7965	15409	10653	15916	8358.59	3183	7900	13993	2.484	1.312	1.62382789292162e-15	2.56105283754238e-15	0.0187	0.0152
+CADAFUBG00000043	2073	1871	2268	721	561	1157	742	756	779	1481	1451	1432	913	787	1088	1063	993	1110	1146.44	1455	929	1055	0.639	-0.647	1.85704765456737e-06	2.37492076537976e-06	0.0123	0.0131
+CADAFUBG00000044	531	498	642	1168	1207	1416	1168	1231	1256	379	386	405	1479	1693	1331	1673	1617	1789	1194.93	390	1501	1693	3.841	1.942	1.8563606728933e-45	4.94377552613729e-45	0.0116	0.0131
+CADAFUBG00000045	3689	3415	4145	3517	3185	3263	2692	2689	3178	2636	2648	2617	4453	4469	3068	3856	3533	4528	3534.18	2634	3997	3972	1.511	0.596	0.000104629061975431	0.00012734487446776	0.0165	0.0136
+CADAFUBG00000046	1898	1750	2261	1724	1544	1391	801	1024	962	1356	1357	1428	2183	2166	1308	1147	1345	1371	1517.91	1380	1886	1288	1.355	0.438	0.0105183036880742	0.0118627692775997	0.0203	0.0128
+CADAFUBG00000047	16183	14548	18553	487	515	515	1177	847	1909	11564	11281	11716	617	723	484	1686	1113	2720	4655.78	11520	608	1840	0.053	-4.24	9.17849161276354e-57	2.9203982569452e-56	0.0389	0.0141
+CADAFUBG00000048	808	762	983	11	4	28	57	43	81	577	591	621	14	6	26	82	56	115	232.04	596	15	84	0.027	-5.231	9.54093090650709e-66	3.43793543859631e-65	0.0349	0.0266
+CADAFUBG00000049	2235	1956	2293	1294	1115	2690	286	401	343	1597	1517	1448	1638	1564	2529	410	527	489	1302.1	1521	1910	475	1.238	0.308	0.0592741733824794	0.0647435493199069	0.0184	0.0129
+CADAFUBG00000050	2297	2036	2533	2473	2041	3122	1807	1900	1934	1641	1579	1600	3131	2864	2935	2588	2496	2755	2398.85	1607	2977	2613	1.853	0.89	3.48968350006007e-15	5.45973784808232e-15	0.0087	0.013
+CADAFUBG00000051	1438	1298	1621	1753	1483	2235	2291	2514	2160	1028	1006	1024	2220	2081	2101	3282	3303	3077	2124.57	1019	2134	3221	2.093	1.065	5.11878195450022e-22	9.14189777991997e-22	0.008	0.0129
+CADAFUBG00000052	1442	1241	1412	973	884	1082	627	698	591	1030	962	892	1232	1240	1017	898	917	842	1003.45	961	1163	886	1.208	0.272	0.0242715031483265	0.0270123411106861	0.0096	0.0135
+CADAFUBG00000053	3109	3002	3658	5321	5346	6208	3864	4368	4342	2222	2328	2310	6737	7501	5837	5535	5739	6186	4932.6	2287	6692	5820	2.926	1.549	2.41759310745393e-31	5.13514462814115e-31	0.012	0.0142
+CADAFUBG00000054	4244	3914	4997	838	769	1325	1330	1229	1457	3033	3035	3156	1061	1079	1246	1905	1615	2076	2022.7	3075	1129	1865	0.367	-1.447	5.66286496424331e-30	1.17184352281982e-29	0.0106	0.0128
+CADAFUBG00000055	18539	16716	20087	447	299	482	1140	1085	1040	13247	12962	12685	566	420	453	1633	1425	1482	4985.8	12965	480	1513	0.037	-4.76	1.03371069722815e-218	3.23043990253771e-217	0.0114	0.0142
+CADAFUBG00000056	643	617	794	1628	1622	1719	627	853	687	459	478	501	2061	2276	1616	898	1121	979	1154.46	479	1984	999	4.126	2.045	7.1083623562072e-40	1.73746490583745e-39	0.0151	0.0131
+CADAFUBG00000057	940	826	1157	2643	2247	3281	1414	1637	1554	672	640	731	3347	3153	3085	2025	2151	2214	2001.87	681	3195	2130	4.692	2.23	1.53252463168404e-74	6.24195103539936e-74	0.0093	0.0128
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+CADAFUBG00000068	0	1	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000069	72	59	67	307	236	498	1675	1281	1527	51	46	42	389	331	468	2399	1683	2175	842.81	46	396	2086	8.541	3.094	1.09478704596408e-53	3.32929931812289e-53	0.0191	0.0142
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+CADAFUBG00000072	3	3	1	9	12	16	8	5	2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000073	1	2	4	33	19	39	20	23	20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000074	10	7	4	11	22	16	5	3	6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000075	4	1	4	12	8	8	8	10	5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000076	4	5	10	3	3	5	2	7	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000077	10	4	8	1	0	4	12	0	13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000078	133	104	123	5	4	8	14	8	29	95	81	78	6	6	8	20	11	41	38.3	85	7	24	0.079	-3.671	1.02463117931584e-23	1.89777593858627e-23	0.0366	0.0153
+CADAFUBG00000079	69	75	84	5	0	2	8	3	8	49	58	53	6	0	2	11	4	11	21.72	53	3	9	0.053	-4.229	2.13182351278418e-30	4.44897796718486e-30	0.0104	0.0087
+CADAFUBG00000080	389	357	455	6	2	7	3	1	4	278	277	287	8	3	7	4	1	6	96.71	281	6	4	0.021	-5.562	4.50267110154778e-80	2.00289624465329e-79	0.0192	0.0271
+CADAFUBG00000081	9	8	9	3	0	2	5	1	4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
+CADAFUBG00000082	41	26	45	13	25	32	73	73	81	29	20	28	16	35	30	105	96	115	52.82	26	27	105	1.035	0.049	0.856200331674351	0.863738191150296	0.0185	0.0183
+CADAFUBG00000083	2	2	5	1	1	1	3	3	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
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