Mercurial > repos > lgueguen > sartools
diff abims_sartools_edger_wrapper.py @ 3:de6d0b7c17af draft
release 1.6.3
author | lgueguen |
---|---|
date | Mon, 01 Oct 2018 05:07:56 -0400 |
parents | 581d217c7337 |
children | 05c9b1a7f44e |
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--- a/abims_sartools_edger_wrapper.py Wed May 17 05:09:10 2017 -0400 +++ b/abims_sartools_edger_wrapper.py Mon Oct 01 05:07:56 2018 -0400 @@ -31,6 +31,7 @@ parser.add_argument('--geneSelection') parser.add_argument('--normalizationMethod') parser.add_argument('--colors') + parser.add_argument('--forceCairoGraph') parser.add_argument('--figures_html') parser.add_argument('--figures_html_files_path') parser.add_argument('--tables_html') @@ -53,6 +54,7 @@ geneSelection=args.geneSelection normalizationMethod=args.normalizationMethod colors=args.colors + forceCairoGraph=args.forceCairoGraph figures_html=args.figures_html figures_html_files_path=args.figures_html_files_path tables_html=args.tables_html @@ -91,6 +93,8 @@ cmd+="--normalizationMethod %s " % (normalizationMethod) if colors: cmd+="--colors %s " % (colors) + if forceCairoGraph: + cmd+="--forceCairoGraph %s " % (forceCairoGraph) cmd+="> %s 2>&1" % (log) print("Rscript command: %s") % (cmd) os.system(cmd)