Mercurial > repos > lionelguy > prokka

annotate tool_dependencies.xml @ 3:5c289bf13a08 draft

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author lionelguy
date Thu, 05 Sep 2013 03:59:23 -0400
parents 2bb7c28ea68f
children 6acf850bca99
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1
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="prokka" version="1.7">
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://www.vicbioinformatics.com/prokka-1.7.tar.gz</action>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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7 <!-- Copying the whole bin, binaries, doc and db folders -->
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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8 <action type="make_directory">$INSTALL_DIR/bin</action>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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9 <action type="make_directory">$INSTALL_DIR/binaries</action>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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10 <action type="make_directory">$INSTALL_DIR/db</action>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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11 <action type="make_directory">$INSTALL_DIR/doc</action>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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12 <action type="move_directory_files">
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13 <source_directory>bin</source_directory>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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14 <destination_directory>$INSTALL_DIR/bin</destination_directory>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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15 </action>
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16 <action type="move_directory_files">
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17 <source_directory>binaries</source_directory>
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18 <destination_directory>$INSTALL_DIR/binaries</destination_directory>
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19 </action>
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20 <action type="move_directory_files">
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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21 <source_directory>db</source_directory>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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22 <destination_directory>$INSTALL_DIR/db</destination_directory>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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23 </action>
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24 <action type="move_directory_files">
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25 <source_directory>doc</source_directory>
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26 <destination_directory>$INSTALL_DIR/doc</destination_directory>
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27 </action>
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28 <action type="set_environment">
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29 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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30 </action>
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31 </actions>
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32 </install>
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33
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34 <readme>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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35 This installs prokka 1.7
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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36 Note: this is about a 2.0 GB download due to included custom databases.</readme>
2bb7c28ea68f Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
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37 </package>
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38 </tool_dependency>