Mercurial > repos > lionelguy > prokka
comparison readme.rst @ 5:2152cd50e4e4 draft
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author | lionelguy |
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date | Thu, 05 Sep 2013 04:08:31 -0400 |
parents | 563743fcaae1 |
children | 323490ee1feb |
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12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. | 12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. |
13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. | 13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. |
14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the `NCBI ftp site`_ | 14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the `NCBI ftp site`_ |
15 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/ | |
16 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. | 15 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. |
17 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system | 16 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system |
18 | 17 |
19 Version history | 18 Version history |
20 --------------- | 19 --------------- |