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comparison readme.rst @ 10:2720b1e27a9c draft

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Added dependency for infernal
author lionelguy
date Fri, 06 Sep 2013 05:38:49 -0400
parents 323490ee1feb
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9:37e2aeda27f4 10:2720b1e27a9c
7 Prokka comes with custom databases and is thus very large: **~2Gb**! 7 Prokka comes with custom databases and is thus very large: **~2Gb**!
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9 Note 9 Note
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11 11
12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka.
13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. 12 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed.
14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI ftp site ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/. 13 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI ftp site ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/.
15 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. 14 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future.
16 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system 15 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system
17 16