Mercurial > repos > lionelguy > prokka
comparison readme.rst @ 1:2bb7c28ea68f draft
Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
| author | lionelguy |
|---|---|
| date | Wed, 04 Sep 2013 11:33:13 -0400 |
| parents | |
| children | 563743fcaae1 |
comparison
equal
deleted
inserted
replaced
| 0:5c0b71c6a2b0 | 1:2bb7c28ea68f |
|---|---|
| 1 Prokka wrapper | |
| 2 ============== | |
| 3 | |
| 4 Warning | |
| 5 ------- | |
| 6 | |
| 7 Prokka comes with custom databases and is thus very large: **~2Gb**! | |
| 8 | |
| 9 Note | |
| 10 ---- | |
| 11 | |
| 12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. | |
| 13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. | |
| 14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI (ftp) at the following address. | |
| 15 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/ | |
| 16 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. | |
| 17 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system | |
| 18 | |
| 19 Version history | |
| 20 --------------- | |
| 21 | |
| 22 - v0.2: added this readme file, supports prokka 1.7 and adds dependencies management. | |
| 23 - v0.1: initial release in the toolshed, supports prokka 1.6. | |
| 24 | |
| 25 | |
| 26 Copyright | |
| 27 --------- | |
| 28 | |
| 29 prokka is developed by Torsten Seemann at Victorian Bioinformatics Consortium http://www.bioinformatics.net.au/. prokka is released under GPLv3 or later. | |
| 30 | |
| 31 This wrapper is copyrighted by Lionel Guy, and is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. | |
| 32 | |
| 33 This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. | |
| 34 | |
| 35 You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/. |