Mercurial > repos > lionelguy > prokka

comparison tool_dependencies.xml @ 1:2bb7c28ea68f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Committed version 0.2: added dependency management and a readme file, and support prokka 1.7
author lionelguy
date Wed, 04 Sep 2013 11:33:13 -0400
parents
children 6acf850bca99
comparison
equal deleted inserted replaced
0:5c0b71c6a2b0 1:2bb7c28ea68f
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="prokka" version="1.7">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://www.vicbioinformatics.com/prokka-1.7.tar.gz</action>
7 <!-- Copying the whole bin, binaries, doc and db folders -->
8 <action type="make_directory">$INSTALL_DIR/bin</action>
9 <action type="make_directory">$INSTALL_DIR/binaries</action>
10 <action type="make_directory">$INSTALL_DIR/db</action>
11 <action type="make_directory">$INSTALL_DIR/doc</action>
12 <action type="move_directory_files">
13 <source_directory>bin</source_directory>
14 <destination_directory>$INSTALL_DIR/bin</destination_directory>
15 </action>
16 <action type="move_directory_files">
17 <source_directory>binaries</source_directory>
18 <destination_directory>$INSTALL_DIR/binaries</destination_directory>
19 </action>
20 <action type="move_directory_files">
21 <source_directory>db</source_directory>
22 <destination_directory>$INSTALL_DIR/db</destination_directory>
23 </action>
24 <action type="move_directory_files">
25 <source_directory>doc</source_directory>
26 <destination_directory>$INSTALL_DIR/doc</destination_directory>
27 </action>
28 <action type="set_environment">
29 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
30 </action>
31 </actions>
32 </install>
33
34 <readme>
35 This installs prokka 1.7
36 Note: this is about a 2.0 GB download due to included custom databases.</readme>
37 </package>
38 </tool_dependency>