Mercurial > repos > lionelguy > prokka

comparison readme.rst @ 6:323490ee1feb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author lionelguy
date Thu, 05 Sep 2013 04:11:04 -0400
parents 2152cd50e4e4
children 2720b1e27a9c
comparison
equal deleted inserted replaced
5:2152cd50e4e4 6:323490ee1feb
9 Note 9 Note
10 ---- 10 ----
11 11
12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. 12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka.
13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. 13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed.
14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the `NCBI ftp site`_ 14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI ftp site ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/.
15 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. 15 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future.
16 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system 16 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system
17 17
18 Version history 18 Version history
19 --------------- 19 ---------------
30 This wrapper is copyrighted by Lionel Guy, and is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. 30 This wrapper is copyrighted by Lionel Guy, and is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
31 31
32 This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. 32 This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
33 33
34 You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/. 34 You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
35
36 .. _`NCBI ftp site`://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/