Mercurial > repos > lionelguy > prokka

comparison prokka.xml @ 7:39bc9c61c55b draft

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Uploaded
author lionelguy
date Thu, 05 Sep 2013 07:42:05 -0400
parents 5c289bf13a08
children 37e2aeda27f4
comparison
equal deleted inserted replaced
6:323490ee1feb 7:39bc9c61c55b
2 <description>prokaryotic genome annotation</description> 2 <description>prokaryotic genome annotation</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.7">prokka</requirement> 4 <requirement type="package" version="1.7">prokka</requirement>
5 <requirement type="package" version="1.2.36">aragorn</requirement> 5 <requirement type="package" version="1.2.36">aragorn</requirement>
6 <requirement type="package" version="2.60">prodigal</requirement> 6 <requirement type="package" version="2.60">prodigal</requirement>
7 <!--<requirement type="package" version="0.1">package_barrnap_0_1</requirement>-->
7 <requirement type="package" version="0.1">barrnap</requirement> 8 <requirement type="package" version="0.1">barrnap</requirement>
8 <!-- <requirement type="package" version="4.1">signalp</requirement> --> 9 <!-- <requirement type="package" version="4.1">signalp</requirement> -->
9 <!-- <requirement type="package" version="3.0">infernal</requirement> --> 10 <!-- <requirement type="package" version="3.0">infernal</requirement> -->
10 <requirement type="package" version="3.1b1">hmmer</requirement> 11 <requirement type="package" version="3.1b1">hmmer</requirement>
11 <requirement type="package" version="2.2.26+">blast+</requirement> 12 <requirement type="package" version="2.2.26+">blast+</requirement>
102 description="Input file not a readable non-empty FASTA file" /> 103 description="Input file not a readable non-empty FASTA file" />
103 <regex match="Illegal division by zero" 104 <regex match="Illegal division by zero"
104 source="both" 105 source="both"
105 level="fatal" 106 level="fatal"
106 description="Illegal division by zero" /> 107 description="Illegal division by zero" />
108 <regex match="no suitable sequence entries"
109 source="both"
110 level="fatal"
111 description="Input contains no suitable sequences" />
112 <regex match="Can't find required"
113 source="both"
114 level="fatal"
115 description="Dependencies not available" />
116
107 </stdio> 117 </stdio>
108 118
109 <help> 119 <help>
110 **What it does** 120 **What it does**
111 121