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comparison readme.rst @ 4:563743fcaae1 draft

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author lionelguy
date Thu, 05 Sep 2013 04:07:37 -0400
parents 2bb7c28ea68f
children 2152cd50e4e4
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3:5c289bf13a08 4:563743fcaae1
9 Note 9 Note
10 ---- 10 ----
11 11
12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka. 12 - **infernal** >= 1.1rc4 is an optional dependency to find non-coding RNAs. An executable is shipped with prokka.
13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed. 13 - **SignalP** >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, no automatic dependency is managed.
14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the NCBI (ftp) at the following address. 14 - **tbl2asn** >= 21.0 is required. This dependency is not managed here. The reason is that versions are increasing very rapidly. The software can be downloaded from the `NCBI ftp site`_
15 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/ 15 ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/
16 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future. 16 - **BioPerl** >= 1.6 is required, but the dependency is not managed here, although it might in future.
17 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system 17 - **GNU Parallel** >= 20120322 is required but is shipped with Prokka and thus is not managed by the tool dependency system
18 18
19 Version history 19 Version history
31 This wrapper is copyrighted by Lionel Guy, and is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. 31 This wrapper is copyrighted by Lionel Guy, and is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
32 32
33 This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. 33 This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
34 34
35 You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/. 35 You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
36
37 .. _`NCBI ftp site`://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/