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Initial public release of the seqprep wrapper, v0.1
author lionelguy
date Wed, 23 Oct 2013 09:44:03 -0400
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-1:000000000000 0:c0ecd158e2a7
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="SeqPrep" version="11301c4a5f3222bdb4d0ec30ae5e192e609c0154">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">git clone --recursive git://github.com/jstjohn/SeqPrep.git</action>
7 <action type="shell_command">git reset --hard 11301c4a5f3222bdb4d0ec30ae5e192e609c0154</action>
8 <action type="shell_command">make</action>
9 <action type="make_directory">$INSTALL_DIR/bin</action>
10 <action type="move_file">
11 <source>SeqPrep</source>
12 <destination>$INSTALL_DIR/bin</destination>
13 </action>
14 <action type="move_file">
15 <source>Test/seqlens.py</source>
16 <destination>$INSTALL_DIR/bin</destination>
17 </action>
18 <action type="chmod">
19 <file mode="750">$INSTALL_DIR/bin/seqlens.py</file>
20 </action>
21 <action type="set_environment">
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
23 </action>
24 </actions>
25 </install>
26 <readme>
27 SeqPrep is copyrighted (2011) to John St. John.
28 Downloading from https://github.com/jstjohn/SeqPrep
29 </readme>
30 </package>
31 </tool_dependency>