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12
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1 1.0
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2 ===
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3 - Supports SPAdes 3.5.0
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4 - New MismatchCorrector module.
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5 - Support for Oxford Nanopore long reads.
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6 - Support for Lucigen NxMate mate-pair libraries.
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7 - Possibility to specify coverage cutoff: automatic and manual.
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8 - CHANGE: Better running time.
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9 - CHANGE: Improved RAM consumption.
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10 - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end).
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11
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12 FIX: Fixed FASTG format.
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10
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13 0.9
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14 ===
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15 - Supports SPAdes 3.1.1
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16 - Supports Mate-pair only assembly with high-quality libraries
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17 - Added support for List Paired Collection for files in a library.
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18 - Renaming of contig names in scaffolds and contig files if List Paired Collection given
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19
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7
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20 0.7
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21 ===
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22 (thanks to Nicola Soranzo for fixing these bugs)
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23 - spades.pl doesn't die when NODE number is 0
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24 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format
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25 - switched the --threads parameter to $GALAXY_SLOTS
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26 - a few minor improvements
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27
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28 0.6
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29 ===
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30 - Supports SPAdes 2.5.1
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31 - Disables gzipped output for corrected reads
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32 - Removes the hack that was necessary to accept .dat files (thanks to SPAdes
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33 new input format
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34 - Adds licensing information
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35
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10
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36 (started at version 0.6)
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