Mercurial > repos > lionelguy > spades
diff tools/spades_3_1_1/CHANGE @ 12:85c6121d92a5 draft
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author | takadonet |
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date | Tue, 16 Dec 2014 12:57:49 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/spades_3_1_1/CHANGE Tue Dec 16 12:57:49 2014 -0500 @@ -0,0 +1,36 @@ +1.0 +=== +- Supports SPAdes 3.5.0 +- New MismatchCorrector module. +- Support for Oxford Nanopore long reads. +- Support for Lucigen NxMate mate-pair libraries. +- Possibility to specify coverage cutoff: automatic and manual. +- CHANGE: Better running time. +- CHANGE: Improved RAM consumption. +- CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end). + +FIX: Fixed FASTG format. +0.9 +=== +- Supports SPAdes 3.1.1 +- Supports Mate-pair only assembly with high-quality libraries +- Added support for List Paired Collection for files in a library. +- Renaming of contig names in scaffolds and contig files if List Paired Collection given + +0.7 +=== +(thanks to Nicola Soranzo for fixing these bugs) +- spades.pl doesn't die when NODE number is 0 +- removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format +- switched the --threads parameter to $GALAXY_SLOTS +- a few minor improvements + +0.6 +=== +- Supports SPAdes 2.5.1 +- Disables gzipped output for corrected reads +- Removes the hack that was necessary to accept .dat files (thanks to SPAdes + new input format +- Adds licensing information + +(started at version 0.6)