# HG changeset patch
# User lionelguy
# Date 1378986530 14400
# Node ID 2f7860a0017b69938fce7b9972d2284d20db5af0
# Parent  a0ea0f7ae029983e7bb3a2c2a5173e05e7787034
Deleted selected files

diff -r a0ea0f7ae029 -r 2f7860a0017b tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Sep 12 07:48:30 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="spades" version="2.5.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://spades.bioinf.spbau.ru/release2.5.1/SPAdes-2.5.1-Linux.tar.gz</action>
-                <!-- Copying the whole bin folder -->
-		<action type="make_directory">$INSTALL_DIR/bin</action>
-		<action type="make_directory">$INSTALL_DIR/share</action>
-		<action type="move_directory_files">
-		  <source_directory>bin</source_directory>
-		  <destination_directory>$INSTALL_DIR/bin</destination_directory>
-		</action>
-                <action type="move_directory_files">
-		  <source_directory>share</source_directory>
-		  <destination_directory>$INSTALL_DIR/share</destination_directory>
-		</action>
-		<!-- This is required to have spades accept .dat files -->
-		<!-- <action type="shell_command">sed -i -e "s/\('\.fa', '\.fasta', '\.fq', '\.fastq', '\.gz'\)/\\1, '.dat'/" $INSTALL_DIR/share/spades/spades_pipeline/support.py</action> -->
-                <!-- <action type="set_environment"> -->
-                <!--     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> -->
-                <!-- </action> -->
-            </actions>
-        </install>
-        <readme>
-This installs SPAdes 2.5.1.
-
-See manual here http://spades.bioinf.spbau.ru/release2.5.1/manual.html
-See also here http://bioinf.spbau.ru/en/spades
-        </readme>
-    </package>
-</tool_dependency>
-