comparison macros.xml @ 0:8745321ccc3e draft

planemo upload for repository https://github.com/lldelisle/tools-lldelisle/blob/master/tools/cooler/.shed.yml commit 67c1d2510db398d4f942bb59aca520fdf9cbe296
author lldelisle
date Mon, 24 Oct 2022 15:19:04 +0000
parents
children c639f60ae76a
comparison
equal deleted inserted replaced
-1:000000000000 0:8745321ccc3e
1 <macros>
2 <token name="@VERSION@">0.8.11</token>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="1.16">htslib</requirement>
6 <requirement type="package" version="3.7.0">h5py</requirement>
7 <requirement type="package" version="@VERSION@">cooler</requirement>
8 </requirements>
9 </xml>
10 <xml name="stdio">
11 <stdio>
12 <!-- Anything other than zero is an error -->
13 <exit_code range="1:" />
14 <exit_code range=":-1" />
15 <!-- In case the return code has not been set propery check stderr too -->
16 <regex match="Error:" />
17 <regex match="Exception:" />
18 </stdio>
19 <version_command>cooler --version</version_command>
20 </xml>
21 <xml name="size_macro">
22 <conditional name="size_source">
23 <param name="size_source_selector" type="select" label="Choose the source for the chromosome sizes">
24 <option value="cached">Locally cached</option>
25 <option value="history">History</option>
26 </param>
27 <when value="cached">
28 <param name="fasta_cached" type="select" label="Fasta availables">
29 <options from_data_table="fasta_indexes">
30 <validator type="no_options" message="No cached fasta is available"/>
31 </options>
32 </param>
33 </when>
34 <when value="history">
35 <param name="chromosomeSize" multiple="false" type="data" format="tabular" label="Select a file with the size of chromosome (One column with the chromosome names in the desired order, one column with the sizes)."/>
36 </when>
37 </conditional>
38 </xml>
39 <xml name="citation_cooler">
40 <citations>
41 <citation type="doi">10.1093/bioinformatics/btz540</citation>
42 </citations>
43 </xml>
44 </macros>