Mercurial > repos > lldelisle > fromgtftobed12

comparison test-data/test.bed @ 0:418e4d0fe0bd draft

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planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/fromgtfTobed12 commit 1aaffda5b95e0389e315179345642c0d005867c1
author lldelisle
date Fri, 04 Nov 2022 15:37:12 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:418e4d0fe0bd
1 chr1 11868 14409 DDX11L1-202 0 + 11868 11868 0 3 359,109,1189 0,744,1352
2 chr1 12009 13670 DDX11L1-201 0 + 12009 12009 0 6 48,49,85,78,154,218 0,169,603,965,1211,1443
3 chr1 14403 29570 WASH7P-201 0 - 14403 14403 0 11 98,34,152,159,198,136,137,147,99,154,37 0,601,1392,2203,2454,2829,3202,3511,3864,10334,15130
4 chr1 17368 17436 MIR6859-1-201 0 - 17368 17368 0 1 68 0
5 chr1 29553 31097 MIR1302-2HG-202 0 + 29553 29553 0 3 486,104,122 0,1010,1422
6 chr1 30266 31109 MIR1302-2HG-201 0 + 30266 30266 0 2 401,134 0,709
7 chr1 30365 30503 MIR1302-2-201 0 + 30365 30365 0 1 138 0
8 chr1 34553 36081 FAM138A-201 0 - 34553 34553 0 3 621,205,361 0,723,1167
9 chr1 35244 36073 FAM138A-202 0 - 35244 35244 0 2 237,353 0,476
10 chr1 52472 53312 OR4G4P-201 0 + 52472 52472 0 1 840 0
11 chr1 57597 64116 OR4G11P-202 0 + 57597 57597 0 3 56,157,1201 0,1102,5318
12 chr1 62948 63887 OR4G11P-201 0 + 62948 62948 0 1 939 0
13 chr1 65418 71585 OR4F5-202 0 + 65564 70005 0 3 15,54,2549 0,101,3618
14 chr1 69054 70108 OR4F5-201 0 + 69090 70005 0 1 1054 0
15 chr1 89294 120932 AL627309.1-201 0 - 89294 89294 0 4 2335,150,105,158 0,2796,23405,31480
16 chr1 89550 91105 AL627309.3-201 0 - 89550 89550 0 2 500,819 0,736
17 chr1 92229 129217 AL627309.1-202 0 - 92229 92229 0 4 11,105,212,163 0,20470,28491,36825
18 chr1 110952 129173 AL627309.1-203 0 - 110952 110952 0 3 405,105,119 0,1747,18102
19 chr1 120724 133723 AL627309.1-205 0 - 120724 120724 0 4 145,59,169,350 0,149,8330,12649
20 chr1 129080 133566 AL627309.1-204 0 - 129080 129080 0 2 143,193 0,4293
21 chr1 131024 134836 CICP27-201 0 + 131024 131024 0 1 3812 0
22 chr1 135140 135895 AL627309.6-201 0 - 135140 135140 0 1 755 0
23 chr1 137681 137965 AL627309.7-201 0 - 137681 137681 0 1 284 0
24 chr1 139789 140339 AL627309.2-201 0 - 139789 139789 0 2 58,265 0,285
25 chr1 141473 149707 AL627309.5-201 0 - 141473 141473 0 2 1538,3322 0,4912
26 chr1 142807 146831 AL627309.5-202 0 - 142807 142807 0 3 204,124,190 0,3578,3834
27 chr1 146385 173862 AL627309.5-203 0 - 146385 146385 0 8 124,65,529,59,66,216,132,110 0,9381,17877,19498,21714,22663,26171,27367
28 chr1 157783 157887 RNU6-1100P-201 0 - 157783 157783 0 1 104 0
29 chr1 160445 161525 AL627309.4-201 0 + 160445 160445 0 2 245,212 0,868
30 chr1 165888 168767 AL627309.5-204 0 - 165888 165888 0 3 54,66,158 0,2211,2721
31 chr1 182695 184174 FO538757.1-201 0 + 182695 182695 0 5 51,85,78,162,194 0,436,798,1044,1285
32 chr1 185216 195411 WASH9P-201 0 - 185216 185216 0 10 134,69,153,159,202,136,137,146,112,149 0,274,1100,1912,2159,2538,2913,3222,3574,10046
33 chr1 187890 187958 MIR6859-2-201 0 - 187890 187890 0 1 68 0
34 chr1 257863 264733 AP006222.1-201 0 - 257863 257863 0 2 1162,130 0,6740
35 chr1 257912 268816 AP006222.1-202 0 - 257912 257912 0 4 1113,85,902,150 0,3637,9390,10754
36 chr1 258143 359681 AP006222.1-203 0 - 258143 258143 0 4 882,902,135,337 0,98541,99905,101201
37 chr1 258523 268816 AP006222.1-204 0 - 258523 258523 0 3 502,902,150 0,8779,10143
38 chr1 258567 259024 AP006222.1-205 0 - 258567 258567 0 1 457 0
39 chr1 263014 297502 AP006222.1-206 0 - 263014 263014 0 4 5190,150,105,158 0,5652,26251,34330
40 chr1 347981 348366 RPL23AP24-201 0 - 347981 347981 0 1 385 0
41 chr1 358856 365704 AL732372.1-201 0 + 358856 358856 0 2 73,534 0,6314
42 chr1 358871 365510 AL732372.1-202 0 + 358871 358871 0 2 86,340 0,6299
43 chr1 360056 366052 AL732372.1-203 0 + 360056 360056 0 2 112,882 0,5114
44 chr1 365388 366151 AL732372.2-201 0 - 365388 365388 0 2 304,133 0,630
45 chr1 365394 368450 AL732372.2-202 0 - 365394 365394 0 2 298,200 0,2856
46 chr1 365614 379972 AL732372.2-203 0 - 365614 365614 0 3 78,180,204 0,7529,14154
47 chr1 373181 485208 AL732372.2-204 0 - 373181 373181 0 3 142,102,169 0,6587,111858
48 chr1 439869 440232 WBP1LP7-201 0 + 439869 439869 0 1 363 0
49 chr1 450702 451697 OR4F29-201 0 - 450742 451678 0 1 995 0
50 chr1 476363 497259 AL732372.2-205 0 - 476363 476363 0 3 582,169,151 0,8676,20745
51 chr1 484831 495476 AL732372.2-206 0 - 484831 484831 0 3 377,58,200 0,10160,10445
52 chr1 485025 485208 AL732372.2-207 0 - 485025 485025 0 1 183 0
53 chr1 485065 489553 AL732372.2-208 0 - 485065 485065 0 2 143,193 0,4295
54 chr1 487100 489906 CICP7-201 0 + 487100 487100 0 2 2287,190 0,2616
55 chr1 491224 493241 AL732372.3-201 0 - 491224 491224 0 2 765,474 0,1543
56 chr1 494381 496605 AL732372.2-209 0 - 494381 494381 0 2 205,342 0,1882
57 chr1 494463 502508 AL732372.2-210 0 - 494463 494463 0 5 435,58,191,65,44 0,528,2645,7092,8001
58 chr1 494474 495368 AL732372.2-211 0 - 494474 494474 0 3 424,58,92 0,517,802
59 chr1 494610 499175 AL732372.2-212 0 - 494610 494610 0 3 288,58,492 0,381,4073
60 chr1 494770 498976 AL732372.2-213 0 - 494770 494770 0 5 128,58,191,58,293 0,221,2338,3628,3913
61 chr1 497133 498456 AL732372.2-214 0 - 497133 497133 0 3 166,233,58 0,939,1265
62 chr1 497204 502598 AL732372.2-215 0 - 497204 497204 0 6 24,233,58,65,57,134 0,868,1194,4351,4982,5260
63 chr1 497209 502873 AL732372.2-216 0 - 497209 497209 0 4 90,58,65,409 0,1189,4346,5255
64 chr1 497239 499002 AL732372.2-217 0 - 497239 497239 0 4 60,259,58,319 0,807,1159,1444
65 chr1 497244 502598 AL732372.2-218 0 - 497244 497244 0 5 55,233,58,65,134 0,828,1154,4311,5220
66 chr1 497274 498976 AL732372.2-219 0 - 497274 497274 0 2 25,578 0,1124
67 chr1 498280 499175 AL732372.2-220 0 - 498280 498280 0 3 25,58,492 0,118,403
68 chr1 498983 501607 AL732372.2-221 0 - 498983 498983 0 2 386,52 0,2572
69 chr1 501587 517252 AL732372.2-222 0 - 501587 501587 0 5 33,94,124,65,68 0,1274,3392,12771,15597
70 chr1 501603 517225 AL732372.2-223 0 - 501603 501603 0 5 17,197,124,65,70 0,861,3376,12755,15552
71 chr1 504469 514413 AL732372.2-224 0 - 504469 504469 0 2 464,55 0,9889
72 chr1 504864 522928 AL732372.2-225 0 - 504864 504864 0 4 239,65,82,70 0,9494,12320,17994
73 chr1 516375 516479 RF00026.90-201 0 - 516375 516375 0 1 104 0
74 chr1 586070 612813 AL669831.3-201 0 - 586070 586070 0 6 288,135,128,180,102,73 0,750,8558,15327,21884,26670
75 chr1 586277 588453 AL669831.3-202 0 - 586277 586277 0 3 81,135,337 0,543,1839
76 chr1 586944 720194 AL669831.3-203 0 - 586944 586944 0 4 11,105,212,163 0,116740,124766,133087
77 chr1 587628 594768 AC114498.1-201 0 + 587628 587628 0 2 73,534 0,6606
78 chr1 587667 594574 AC114498.1-202 0 + 587667 587667 0 2 62,340 0,6567
79 chr1 594190 633129 AL669831.3-204 0 - 594190 594190 0 5 566,180,102,88,86 0,7207,13764,34728,38853
80 chr1 594197 631204 AL669831.3-205 0 - 594197 594197 0 6 559,180,102,124,88,74 0,7200,13757,18543,34721,36933
81 chr1 594307 598551 AL669831.3-206 0 - 594307 594307 0 2 449,1253 0,2991
82 chr1 594307 827769 AL669831.3-207 0 - 594307 594307 0 4 449,180,212,100 0,7090,117403,233362
83 chr1 594307 827796 AL669831.3-208 0 - 594307 594307 0 5 449,180,102,33,127 0,7090,13647,104619,233362
84 chr1 594457 733064 AL669831.3-209 0 - 594457 594457 0 8 299,180,102,33,158,169,191,84 0,6940,13497,104469,117307,125574,137559,138523
85 chr1 601435 720200 AL669831.3-210 0 - 601435 601435 0 3 142,102,169 0,6519,118596
86 chr1 627376 631150 AL669831.3-211 0 - 627376 627376 0 4 447,263,88,20 0,584,1542,3754
87 chr1 629061 629433 MTND1P23-201 0 + 629061 629061 0 1 372 0
88 chr1 629639 630683 MTND2P28-201 0 + 629639 629639 0 1 1044 0
89 chr1 631073 632616 MTCO1P12-201 0 + 631073 631073 0 1 1543 0
90 chr1 632324 632413 MIR6723-201 0 - 632324 632324 0 1 89 0
91 chr1 632756 633438 MTCO2P12-201 0 + 632756 632756 0 1 682 0
92 chr1 633534 633741 MTATP8P1-201 0 + 633534 633534 0 1 207 0
93 chr1 633695 634376 MTATP6P1-201 0 + 633695 633695 0 1 681 0
94 chr1 634375 634922 MTCO3P12-201 0 + 634375 634375 0 1 547 0
95 chr1 674841 675265 WBP1LP6-201 0 + 674841 674841 0 1 424 0
96 chr1 685678 686673 OR4F16-201 0 - 685718 686654 0 1 995 0
97 chr1 701935 720150 AL669831.3-212 0 - 701935 701935 0 3 405,105,119 0,1749,18096
98 chr1 711866 732212 AL669831.3-213 0 - 711866 711866 0 3 56,169,196 0,8165,20150
99 chr1 720023 720206 AL669831.3-214 0 - 720023 720023 0 1 183 0
100 chr1 720052 724564 AL669831.3-215 0 - 720052 720052 0 2 148,207 0,4305
101 chr1 722091 724903 CICP3-201 0 + 722091 722091 0 2 2269,186 0,2626
102 chr1 725884 778626 AL669831.1-201 0 - 725884 725884 0 16 3920,58,191,171,197,98,124,65,157,525,59,66,216,132,110,343 0,7422,9538,17295,18310,18843,20810,30192,33082,38838,40444,42663,43612,47091,48286,52399
103 chr1 758232 758336 RNU6-1199P-201 0 - 758232 758232 0 1 104 0
104 chr1 760910 761989 AL669831.2-201 0 + 760910 760910 0 2 244,212 0,867
105 chr1 764722 774280 AL669831.1-202 0 - 764722 764722 0 5 78,104,59,66,110 0,421,1606,3825,9448