view test-data/testWithGenes.bed @ 1:6fd4b3b90220 draft default tip

planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/fromgtfTobed12 commit 15b8c2cc83708044413a152322bcbfca8a74d29a
author lldelisle
date Fri, 03 Nov 2023 14:13:51 +0000
parents 418e4d0fe0bd
children
line wrap: on
line source

chr1	11868	14409	DDX11L1	0	+	11868	11868	0	3	359,109,1189	0,744,1352
chr1	12009	13670	DDX11L1	0	+	12009	12009	0	6	48,49,85,78,154,218	0,169,603,965,1211,1443
chr1	14403	29570	WASH7P	0	-	14403	14403	0	11	98,34,152,159,198,136,137,147,99,154,37	0,601,1392,2203,2454,2829,3202,3511,3864,10334,15130
chr1	17368	17436	MIR6859-1	0	-	17368	17368	0	1	68	0
chr1	29553	31097	MIR1302-2HG	0	+	29553	29553	0	3	486,104,122	0,1010,1422
chr1	30266	31109	MIR1302-2HG	0	+	30266	30266	0	2	401,134	0,709
chr1	30365	30503	MIR1302-2	0	+	30365	30365	0	1	138	0
chr1	34553	36081	FAM138A	0	-	34553	34553	0	3	621,205,361	0,723,1167
chr1	35244	36073	FAM138A	0	-	35244	35244	0	2	237,353	0,476
chr1	52472	53312	OR4G4P	0	+	52472	52472	0	1	840	0
chr1	57597	64116	OR4G11P	0	+	57597	57597	0	3	56,157,1201	0,1102,5318
chr1	62948	63887	OR4G11P	0	+	62948	62948	0	1	939	0
chr1	65418	71585	OR4F5	0	+	65564	70005	0	3	15,54,2549	0,101,3618
chr1	69054	70108	OR4F5	0	+	69090	70005	0	1	1054	0
chr1	89294	120932	AL627309.1	0	-	89294	89294	0	4	2335,150,105,158	0,2796,23405,31480
chr1	89550	91105	AL627309.3	0	-	89550	89550	0	2	500,819	0,736
chr1	92229	129217	AL627309.1	0	-	92229	92229	0	4	11,105,212,163	0,20470,28491,36825
chr1	110952	129173	AL627309.1	0	-	110952	110952	0	3	405,105,119	0,1747,18102
chr1	120724	133723	AL627309.1	0	-	120724	120724	0	4	145,59,169,350	0,149,8330,12649
chr1	129080	133566	AL627309.1	0	-	129080	129080	0	2	143,193	0,4293
chr1	131024	134836	CICP27	0	+	131024	131024	0	1	3812	0
chr1	135140	135895	AL627309.6	0	-	135140	135140	0	1	755	0
chr1	137681	137965	AL627309.7	0	-	137681	137681	0	1	284	0
chr1	139789	140339	AL627309.2	0	-	139789	139789	0	2	58,265	0,285
chr1	141473	149707	AL627309.5	0	-	141473	141473	0	2	1538,3322	0,4912
chr1	142807	146831	AL627309.5	0	-	142807	142807	0	3	204,124,190	0,3578,3834
chr1	146385	173862	AL627309.5	0	-	146385	146385	0	8	124,65,529,59,66,216,132,110	0,9381,17877,19498,21714,22663,26171,27367
chr1	157783	157887	RNU6-1100P	0	-	157783	157783	0	1	104	0
chr1	160445	161525	AL627309.4	0	+	160445	160445	0	2	245,212	0,868
chr1	165888	168767	AL627309.5	0	-	165888	165888	0	3	54,66,158	0,2211,2721
chr1	182695	184174	FO538757.1	0	+	182695	182695	0	5	51,85,78,162,194	0,436,798,1044,1285
chr1	185216	195411	WASH9P	0	-	185216	185216	0	10	134,69,153,159,202,136,137,146,112,149	0,274,1100,1912,2159,2538,2913,3222,3574,10046
chr1	187890	187958	MIR6859-2	0	-	187890	187890	0	1	68	0
chr1	257863	264733	AP006222.1	0	-	257863	257863	0	2	1162,130	0,6740
chr1	257912	268816	AP006222.1	0	-	257912	257912	0	4	1113,85,902,150	0,3637,9390,10754
chr1	258143	359681	AP006222.1	0	-	258143	258143	0	4	882,902,135,337	0,98541,99905,101201
chr1	258523	268816	AP006222.1	0	-	258523	258523	0	3	502,902,150	0,8779,10143
chr1	258567	259024	AP006222.1	0	-	258567	258567	0	1	457	0
chr1	263014	297502	AP006222.1	0	-	263014	263014	0	4	5190,150,105,158	0,5652,26251,34330
chr1	347981	348366	RPL23AP24	0	-	347981	347981	0	1	385	0
chr1	358856	365704	AL732372.1	0	+	358856	358856	0	2	73,534	0,6314
chr1	358871	365510	AL732372.1	0	+	358871	358871	0	2	86,340	0,6299
chr1	360056	366052	AL732372.1	0	+	360056	360056	0	2	112,882	0,5114
chr1	365388	366151	AL732372.2	0	-	365388	365388	0	2	304,133	0,630
chr1	365394	368450	AL732372.2	0	-	365394	365394	0	2	298,200	0,2856
chr1	365614	379972	AL732372.2	0	-	365614	365614	0	3	78,180,204	0,7529,14154
chr1	373181	485208	AL732372.2	0	-	373181	373181	0	3	142,102,169	0,6587,111858
chr1	439869	440232	WBP1LP7	0	+	439869	439869	0	1	363	0
chr1	450702	451697	OR4F29	0	-	450742	451678	0	1	995	0
chr1	476363	497259	AL732372.2	0	-	476363	476363	0	3	582,169,151	0,8676,20745
chr1	484831	495476	AL732372.2	0	-	484831	484831	0	3	377,58,200	0,10160,10445
chr1	485025	485208	AL732372.2	0	-	485025	485025	0	1	183	0
chr1	485065	489553	AL732372.2	0	-	485065	485065	0	2	143,193	0,4295
chr1	487100	489906	CICP7	0	+	487100	487100	0	2	2287,190	0,2616
chr1	491224	493241	AL732372.3	0	-	491224	491224	0	2	765,474	0,1543
chr1	494381	496605	AL732372.2	0	-	494381	494381	0	2	205,342	0,1882
chr1	494463	502508	AL732372.2	0	-	494463	494463	0	5	435,58,191,65,44	0,528,2645,7092,8001
chr1	494474	495368	AL732372.2	0	-	494474	494474	0	3	424,58,92	0,517,802
chr1	494610	499175	AL732372.2	0	-	494610	494610	0	3	288,58,492	0,381,4073
chr1	494770	498976	AL732372.2	0	-	494770	494770	0	5	128,58,191,58,293	0,221,2338,3628,3913
chr1	497133	498456	AL732372.2	0	-	497133	497133	0	3	166,233,58	0,939,1265
chr1	497204	502598	AL732372.2	0	-	497204	497204	0	6	24,233,58,65,57,134	0,868,1194,4351,4982,5260
chr1	497209	502873	AL732372.2	0	-	497209	497209	0	4	90,58,65,409	0,1189,4346,5255
chr1	497239	499002	AL732372.2	0	-	497239	497239	0	4	60,259,58,319	0,807,1159,1444
chr1	497244	502598	AL732372.2	0	-	497244	497244	0	5	55,233,58,65,134	0,828,1154,4311,5220
chr1	497274	498976	AL732372.2	0	-	497274	497274	0	2	25,578	0,1124
chr1	498280	499175	AL732372.2	0	-	498280	498280	0	3	25,58,492	0,118,403
chr1	498983	501607	AL732372.2	0	-	498983	498983	0	2	386,52	0,2572
chr1	501587	517252	AL732372.2	0	-	501587	501587	0	5	33,94,124,65,68	0,1274,3392,12771,15597
chr1	501603	517225	AL732372.2	0	-	501603	501603	0	5	17,197,124,65,70	0,861,3376,12755,15552
chr1	504469	514413	AL732372.2	0	-	504469	504469	0	2	464,55	0,9889
chr1	504864	522928	AL732372.2	0	-	504864	504864	0	4	239,65,82,70	0,9494,12320,17994
chr1	516375	516479	RF00026	0	-	516375	516375	0	1	104	0
chr1	586070	612813	AL669831.3	0	-	586070	586070	0	6	288,135,128,180,102,73	0,750,8558,15327,21884,26670
chr1	586277	588453	AL669831.3	0	-	586277	586277	0	3	81,135,337	0,543,1839
chr1	586944	720194	AL669831.3	0	-	586944	586944	0	4	11,105,212,163	0,116740,124766,133087
chr1	587628	594768	AC114498.1	0	+	587628	587628	0	2	73,534	0,6606
chr1	587667	594574	AC114498.1	0	+	587667	587667	0	2	62,340	0,6567
chr1	594190	633129	AL669831.3	0	-	594190	594190	0	5	566,180,102,88,86	0,7207,13764,34728,38853
chr1	594197	631204	AL669831.3	0	-	594197	594197	0	6	559,180,102,124,88,74	0,7200,13757,18543,34721,36933
chr1	594307	598551	AL669831.3	0	-	594307	594307	0	2	449,1253	0,2991
chr1	594307	827769	AL669831.3	0	-	594307	594307	0	4	449,180,212,100	0,7090,117403,233362
chr1	594307	827796	AL669831.3	0	-	594307	594307	0	5	449,180,102,33,127	0,7090,13647,104619,233362
chr1	594457	733064	AL669831.3	0	-	594457	594457	0	8	299,180,102,33,158,169,191,84	0,6940,13497,104469,117307,125574,137559,138523
chr1	601435	720200	AL669831.3	0	-	601435	601435	0	3	142,102,169	0,6519,118596
chr1	627376	631150	AL669831.3	0	-	627376	627376	0	4	447,263,88,20	0,584,1542,3754
chr1	629061	629433	MTND1P23	0	+	629061	629061	0	1	372	0
chr1	629639	630683	MTND2P28	0	+	629639	629639	0	1	1044	0
chr1	631073	632616	MTCO1P12	0	+	631073	631073	0	1	1543	0
chr1	632324	632413	MIR6723	0	-	632324	632324	0	1	89	0
chr1	632756	633438	MTCO2P12	0	+	632756	632756	0	1	682	0
chr1	633534	633741	MTATP8P1	0	+	633534	633534	0	1	207	0
chr1	633695	634376	MTATP6P1	0	+	633695	633695	0	1	681	0
chr1	634375	634922	MTCO3P12	0	+	634375	634375	0	1	547	0
chr1	674841	675265	WBP1LP6	0	+	674841	674841	0	1	424	0
chr1	685678	686673	OR4F16	0	-	685718	686654	0	1	995	0
chr1	701935	720150	AL669831.3	0	-	701935	701935	0	3	405,105,119	0,1749,18096
chr1	711866	732212	AL669831.3	0	-	711866	711866	0	3	56,169,196	0,8165,20150
chr1	720023	720206	AL669831.3	0	-	720023	720023	0	1	183	0
chr1	720052	724564	AL669831.3	0	-	720052	720052	0	2	148,207	0,4305
chr1	722091	724903	CICP3	0	+	722091	722091	0	2	2269,186	0,2626
chr1	725884	778626	AL669831.1	0	-	725884	725884	0	16	3920,58,191,171,197,98,124,65,157,525,59,66,216,132,110,343	0,7422,9538,17295,18310,18843,20810,30192,33082,38838,40444,42663,43612,47091,48286,52399
chr1	758232	758336	RNU6-1199P	0	-	758232	758232	0	1	104	0
chr1	760910	761989	AL669831.2	0	+	760910	760910	0	2	244,212	0,867
chr1	764722	774280	AL669831.1	0	-	764722	764722	0	5	78,104,59,66,110	0,421,1606,3825,9448