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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author louise
date Tue, 07 Jun 2011 17:21:49 -0400
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<tool id="export_to_fastq" name="export_to_fastq" version="0.1">
  <description>Convert export file to fastq</description>
  <!-- <command interpreter="sh">export_to_fastq.sh $inputDirectory $threshold $output_file </command> -->
 <command interpreter="sh">export_to_fastq.sh $inputDirectory 0 $output_file </command>
  <inputs nginx_upload="true" >
    <param type="data" name="inputDirectory" label="Directory that containe export file"/>
    <!-- <param type="select" name="threshold" label="Threshold for nFilter">
	   <option value="0">0</option>
	   <option value="1">1</option>
	   <option value="2" selected="true">2</option>
	   <option value="3">3</option>
	   <option value="4">4</option>
	   <option value="5">5</option>
	   <option value="6">6</option>
	   <option value="7">7</option>
	   <option value="8">8</option>
	   <option value="9">9</option>
	   <option value="10">10</option>
   </param> -->
  </inputs>
  <outputs>
    <data format="fastqillumina" name="output_file" />
  </outputs>

  <help>
	  Program: export_to_fastq (v0.1)
	   
	  Author:  Nicolas Delhomme (delhomme@embl.de)
	   
	  Summary: Converts export files to FASTQ format.
	   
	  Usage:   export_to_fastq.sh *input_directory* *threshold* *fastq_file*
	  
	  Note: Here the threshold is set on 0.

  </help>

</tool>