Mercurial > repos > lparsons > cutadapt

annotate test-data/cutadapt_rest_json.txt @ 40:aa784cb3810d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 8bdd212b8708a9d080e87303dd543fb93bc05c2f
author iuc
date Mon, 08 Jul 2024 16:21:21 +0000
parents fe74900d6dc7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
39
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
1 "input": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
2 "path1": "cutadapt_rest_fa.fa",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
3 "path2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
4 "paired": false
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
5 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
6 "read_counts": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
7 "input": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
8 "filtered": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
9 "too_short": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
10 "too_long": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
11 "too_many_n": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
12 "too_many_expected_errors": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
13 "casava_filtered": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
14 "discard_trimmed": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
15 "discard_untrimmed": null
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
16 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
17 "output": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
18 "reverse_complemented": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
19 "read1_with_adapter": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
20 "read2_with_adapter": null
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
21 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
22 "basepair_counts": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
23 "input": 97,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
24 "input_read1": 97,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
25 "input_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
26 "quality_trimmed": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
27 "quality_trimmed_read1": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
28 "quality_trimmed_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
29 "poly_a_trimmed": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
30 "poly_a_trimmed_read1": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
31 "poly_a_trimmed_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
32 "output": 35,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
33 "output_read1": 35,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
34 "output_read2": null
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
35 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
36 "adapters_read1": [
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
37 {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
38 "name": "1",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
39 "total_matches": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
40 "on_reverse_complement": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
41 "linked": false,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
42 "five_prime_end": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
43 "three_prime_end": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
44 "type": "regular_three_prime",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
45 "sequence": "AAAGATG",
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
46 "error_rate": 0.1,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
47 "indels": true,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
48 "error_lengths": [7],
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
49 "matches": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
50 "adjacent_bases": {
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
51 "A": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
52 "C": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
53 "G": 5,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
54 "T": 0,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
55 "": 0
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
56 },
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
57 "dominant_adjacent_base": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
58 "trimmed_lengths": [
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
59 {"len": 7, "expect": 0.0, "counts": [1]},
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
60 {"len": 12, "expect": 0.0, "counts": [1]},
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
61 {"len": 14, "expect": 0.0, "counts": [2]},
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
62 {"len": 15, "expect": 0.0, "counts": [1]}
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
63 ]
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
64 }
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
65 }
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
66 ],
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
67 "adapters_read2": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
68 "poly_a_trimmed_read1": null,
fe74900d6dc7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
iuc
parents:
diff changeset
69 "poly_a_trimmed_read2": null