Mercurial > repos > lparsons > cutadapt

comparison cutadapt.xml @ 36:64172f1c1202 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit f0294a3e33257aee83aa7c507d2abddccebf0239
author iuc
date Thu, 04 Jan 2024 18:44:12 +0000
parents 9845c649f41b
children 944ae523bacb
comparison
equal deleted inserted replaced
35:9845c649f41b 36:64172f1c1202
1310 <has_text text="--match-read-wildcards"/> 1310 <has_text text="--match-read-wildcards"/>
1311 <has_text text="--error-rate=0.0"/> 1311 <has_text text="--error-rate=0.0"/>
1312 <has_text text="-a 'GGGGGGG'"/> 1312 <has_text text="-a 'GGGGGGG'"/>
1313 </assert_command> 1313 </assert_command>
1314 </test> 1314 </test>
1315 <!-- 44. Test mispaired read detection -->
1316 <test expect_failure="true">
1317 <param name="type" value="paired" />
1318 <param name="input_1" ftype="fastq.gz" value="bwa-mem-fastq1.fq.gz" />
1319 <param name="input_2" ftype="fastq.gz" value="bwa-mem-fastq_mispaired2.fq.gz" />
1320 <section name="r1">
1321 <repeat name="adapters">
1322 <conditional name="adapter_source">
1323 <param name="adapter_source_list" value="user"/>
1324 <param name="adapter" value="AGATCGGAAGAGC"/>
1325 </conditional>
1326 </repeat>
1327 </section>
1328 <section name="r2">
1329 <repeat name="adapters2">
1330 <conditional name="adapter_source">
1331 <param name="adapter_source_list" value="user"/>
1332 <param name="adapter" value="AGATCGGAAGAGC"/>
1333 </conditional>
1334 </repeat>
1335 </section>
1336 <assert_stdout>
1337 <has_text text="Reads are improperly paired"/>
1338 </assert_stdout>
1339 </test>
1315 </tests> 1340 </tests>
1316 1341
1317 <help><![CDATA[ 1342 <help><![CDATA[
1318 1343
1319 .. class:: infomark 1344 .. class:: infomark