Mercurial > repos > lparsons > cutadapt

comparison macros.xml @ 16:8f1df515eb87 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 034c93600ce3279644d05f3675b4820ef7180851
author iuc
date Thu, 01 Nov 2018 19:19:11 -0400
parents 78e1cf88d133
children 49370cb85f0f
comparison
equal deleted inserted replaced
15:660cffd8d92a 16:8f1df515eb87
119 <option value="builtin" selected="True">Standard (select from the list below)</option> 119 <option value="builtin" selected="True">Standard (select from the list below)</option>
120 <option value="user">Enter custom sequence</option> 120 <option value="user">Enter custom sequence</option>
121 </param> 121 </param>
122 122
123 <when value="user"> 123 <when value="user">
124 <param name="adapter_name" type="text" value="" optional="True" label="Enter custom 3' adapter name (Optional)" /> 124 <param name="adapter_name" type="text" value="" optional="True" label="Enter custom 3' adapter name (Optional if Multiple output is 'No')" />
125 <param name="adapter" argument="-a" type="text" value="AATTGGCC" label="Enter custom 3' adapter sequence" /> 125 <param name="adapter" argument="-a" type="text" value="AATTGGCC" label="Enter custom 3' adapter sequence" />
126 </when> 126 </when>
127 127
128 <when value="builtin"> 128 <when value="builtin">
129 <param name="adapter" argument="-a" type="select" label="Choose 3' adapter"> 129 <param name="adapter" argument="-a" type="select" label="Choose 3' adapter">
141 <option value="builtin" selected="True">Standard (select from the list below)</option> 141 <option value="builtin" selected="True">Standard (select from the list below)</option>
142 <option value="user">Enter custom sequence</option> 142 <option value="user">Enter custom sequence</option>
143 </param> 143 </param>
144 144
145 <when value="user"> 145 <when value="user">
146 <param name="front_adapter_name" type="text" value="" optional="True" label="Enter custom 5' adapter name (Optional)" /> 146 <param name="front_adapter_name" type="text" value="" optional="True" label="Enter custom 5' adapter name (Optional if Multiple output is 'No')" />
147 <param name="front_adapter" argument="-g" type="text" value="AATTGGCC" label="Enter custom 5' adapter sequence" /> 147 <param name="front_adapter" argument="-g" type="text" value="AATTGGCC" label="Enter custom 5' adapter sequence" />
148 </when> 148 </when>
149 <when value="builtin"> 149 <when value="builtin">
150 <param name="front_adapter" argument="-g" type="select" label="Choose 5' adapter"> 150 <param name="front_adapter" argument="-g" type="select" label="Choose 5' adapter">
151 <options from_data_table="adapters"> 151 <options from_data_table="adapters">
162 <option value="builtin" selected="True">Standard (select from the list below)</option> 162 <option value="builtin" selected="True">Standard (select from the list below)</option>
163 <option value="user">Enter custom sequence</option> 163 <option value="user">Enter custom sequence</option>
164 </param> 164 </param>
165 165
166 <when value="user"> 166 <when value="user">
167 <param name="anywhere_adapter_name" type="text" value="" optional="True" label="Enter custom 5' or 3' adapter name (Optional)" /> 167 <param name="anywhere_adapter_name" type="text" value="" optional="True" label="Enter custom 5' or 3' adapter name (Optional if Multiple output is 'No')" />
168 <param name="anywhere_adapter" argument="-b" type="text" value="AATTGGCC" label="Enter custom 5' or 3' adapter sequence" /> 168 <param name="anywhere_adapter" argument="-b" type="text" value="AATTGGCC" label="Enter custom 5' or 3' adapter sequence" />
169 </when> 169 </when>
170 <when value="builtin"> 170 <when value="builtin">
171 <param name="anywhere_adapter" argument="-b" type="select" label="Choose 5' or 3' adapter"> 171 <param name="anywhere_adapter" argument="-b" type="select" label="Choose 5' or 3' adapter">
172 <options from_data_table="adapters"> 172 <options from_data_table="adapters">