Mercurial > repos > lparsons > cutadapt

comparison test-data/cutadapt_rest_json.txt @ 39:fe74900d6dc7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
author iuc
date Fri, 17 May 2024 13:32:03 +0000
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38:b1c926deaa2d 39:fe74900d6dc7
1 "input": {
2 "path1": "cutadapt_rest_fa.fa",
3 "path2": null,
4 "paired": false
5 },
6 "read_counts": {
7 "input": 5,
8 "filtered": {
9 "too_short": 0,
10 "too_long": null,
11 "too_many_n": null,
12 "too_many_expected_errors": null,
13 "casava_filtered": null,
14 "discard_trimmed": null,
15 "discard_untrimmed": null
16 },
17 "output": 5,
18 "reverse_complemented": null,
19 "read1_with_adapter": 5,
20 "read2_with_adapter": null
21 },
22 "basepair_counts": {
23 "input": 97,
24 "input_read1": 97,
25 "input_read2": null,
26 "quality_trimmed": null,
27 "quality_trimmed_read1": null,
28 "quality_trimmed_read2": null,
29 "poly_a_trimmed": null,
30 "poly_a_trimmed_read1": null,
31 "poly_a_trimmed_read2": null,
32 "output": 35,
33 "output_read1": 35,
34 "output_read2": null
35 },
36 "adapters_read1": [
37 {
38 "name": "1",
39 "total_matches": 5,
40 "on_reverse_complement": null,
41 "linked": false,
42 "five_prime_end": null,
43 "three_prime_end": {
44 "type": "regular_three_prime",
45 "sequence": "AAAGATG",
46 "error_rate": 0.1,
47 "indels": true,
48 "error_lengths": [7],
49 "matches": 5,
50 "adjacent_bases": {
51 "A": 0,
52 "C": 0,
53 "G": 5,
54 "T": 0,
55 "": 0
56 },
57 "dominant_adjacent_base": null,
58 "trimmed_lengths": [
59 {"len": 7, "expect": 0.0, "counts": [1]},
60 {"len": 12, "expect": 0.0, "counts": [1]},
61 {"len": 14, "expect": 0.0, "counts": [2]},
62 {"len": 15, "expect": 0.0, "counts": [1]}
63 ]
64 }
65 }
66 ],
67 "adapters_read2": null,
68 "poly_a_trimmed_read1": null,
69 "poly_a_trimmed_read2": null