Mercurial > repos > lparsons > cutadapt

diff tool_dependencies.xml @ 8:2d6671b10919 draft

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Updated to support cutadapt version 1.1 (also include automatic dependency installation)
author lparsons
date Mon, 26 Nov 2012 17:37:26 -0500
parents
children 93d58ffe39f1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 26 17:37:26 2012 -0500
@@ -0,0 +1,17 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="cutadapt" version="1.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.1.tar.gz</action>
+                <action type="shell_command">python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>