--- a/tool_dependencies.xml	Mon Nov 26 17:37:26 2012 -0500
+++ b/tool_dependencies.xml	Mon Oct 06 14:01:06 2014 -0400
@@ -1,17 +1,6 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="cutadapt" version="1.1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.1.tar.gz</action>
-                <action type="shell_command">python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="cutadapt" version="1.6">
+        <repository changeset_revision="bbfb88b7c496" name="package_cutadapt_1_6" owner="lparsons" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>