Mercurial > repos > lparsons > cutadapt
diff test-data/cutadapt_rest.json @ 27:de6cebe3c043 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 5eacc4a26d9cd55d1d34d1c35ab200733da6948f"
author | iuc |
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date | Mon, 01 Nov 2021 12:14:05 +0000 |
parents | |
children | 9845c649f41b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cutadapt_rest.json Mon Nov 01 12:14:05 2021 +0000 @@ -0,0 +1,85 @@ +{ + "tag": "Cutadapt report", + "schema_version": [0, 1], + "cutadapt_version": "3.5", + "python_version": "3.9.7", + "command_line_arguments": [ + "-j=1", + "--json", + "stats.json", + "-a", + "AAAGATG", + "--rest-file=rest_output.fa", + "--output=out1.fa", + "--error-rate=0.1", + "--times=1", + "--overlap=3", + "--action=trim", + "cutadapt_rest_fa.fa" + ], + "cores": 1, + "input": { + "path1": "cutadapt_rest_fa.fa", + "path2": null, + "paired": false + }, + "read_counts": { + "input": 5, + "filtered": { + "too_short": null, + "too_long": null, + "too_many_n": null, + "too_many_expected_errors": null, + "casava_filtered": null, + "discard_trimmed": null, + "discard_untrimmed": null + }, + "output": 5, + "reverse_complemented": null, + "read1_with_adapter": 5, + "read2_with_adapter": null + }, + "basepair_counts": { + "input": 97, + "input_read1": 97, + "input_read2": null, + "quality_trimmed": null, + "quality_trimmed_read1": null, + "quality_trimmed_read2": null, + "output": 35, + "output_read1": 35, + "output_read2": null + }, + "adapters_read1": [ + { + "name": "1", + "total_matches": 5, + "on_reverse_complement": null, + "linked": false, + "five_prime_end": null, + "three_prime_end": { + "type": "regular_three_prime", + "sequence": "AAAGATG", + "error_rate": 0.1, + "indels": true, + "error_lengths": [7], + "matches": 5, + "adjacent_bases": { + "A": 0, + "C": 0, + "G": 5, + "T": 0, + "": 0 + }, + "dominant_adjacent_base": null, + "trimmed_lengths": [ + {"len": 7, "expect": 0.0, "counts": [1]}, + {"len": 12, "expect": 0.0, "counts": [1]}, + {"len": 14, "expect": 0.0, "counts": [2]}, + {"len": 15, "expect": 0.0, "counts": [1]} + ] + } + } + ], + "adapters_read2": null +}