Mercurial > repos > lparsons > cutadapt

diff macros.xml @ 20:e4691e1589d3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 59d42345d86e33e01aa50013f00f4dc0612d3de8
author iuc
date Mon, 08 Apr 2019 13:49:22 -0400
parents 49370cb85f0f
children 093678460093
line wrap: on
line diff
--- a/macros.xml	Tue Dec 18 14:09:53 2018 -0500
+++ b/macros.xml	Mon Apr 08 13:49:22 2019 -0400
@@ -48,19 +48,19 @@
             --info-file=$info_file
         #end if
         #if $output_options.rest_file:
-            --rest-file=$rest_output
+            --rest-file='${rest_output}'
         #end if
         #if $output_options.wildcard_file:
-            --wildcard-file=$wild_output
+            --wildcard-file='${wild_output}'
         #end if
         #if $output_options.too_short_file:
-            --too-short-output=$too_short_output
+            --too-short-output='${too_short_output}'
         #end if
         #if $output_options.too_long_file:
-            --too-long-output=$too_long_output
+            --too-long-output='${too_long_output}'
         #end if
         #if $output_options.untrimmed_file:
-            --untrimmed-output=$untrimmed_output
+            --untrimmed-output='${untrimmed_output}'
         #end if
 
     ]]></token>
@@ -110,13 +110,13 @@
         ## Additional Outputs - Read 2
 
         #if $output_options.too_short_file:
-            --too-short-paired-output=$too_short_paired_output
+            --too-short-paired-output='${too_short_paired_output}'
         #end if
         #if $output_options.too_long_file:
-            --too-long-paired-output=$too_long_paired_output
+            --too-long-paired-output='${too_long_paired_output}'
         #end if
         #if $output_options.untrimmed_file:
-            --untrimmed-paired-output=$untrimmed_paired_output
+            --untrimmed-paired-output='${untrimmed_paired_output}'
         #end if
 
     ]]></token>