Mercurial > repos > lparsons > cutadapt

diff test-data/cutadapt_rest.json @ 39:fe74900d6dc7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
author iuc
date Fri, 17 May 2024 13:32:03 +0000
parents b1c926deaa2d
children
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--- a/test-data/cutadapt_rest.json	Mon Apr 15 06:31:32 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,90 +0,0 @@
-{
-  "tag": "Cutadapt report",
-  "schema_version": [0, 1],
-  "cutadapt_version": "3.5",
-  "python_version": "3.9.7",
-  "command_line_arguments": [
-    "-j=1",
-    "--json",
-    "stats.json",
-    "-a",
-    "AAAGATG",
-    "--rest-file=rest_output.fa",
-    "--output=out1.fa",
-    "--error-rate=0.1",
-    "--times=1",
-    "--overlap=3",
-    "--action=trim",
-    "cutadapt_rest_fa.fa"
-  ],
-  "cores": 1,
-  "input": {
-    "path1": "cutadapt_rest_fa.fa",
-    "path2": null,
-    "paired": false
-  },
-  "read_counts": {
-    "input": 5,
-    "filtered": {
-      "too_short": null,
-      "too_long": null,
-      "too_many_n": null,
-      "too_many_expected_errors": null,
-      "casava_filtered": null,
-      "discard_trimmed": null,
-      "discard_untrimmed": null
-    },
-    "output": 5,
-    "reverse_complemented": null,
-    "read1_with_adapter": 5,
-    "read2_with_adapter": null
-  },
-  "basepair_counts": {
-    "input": 97,
-    "input_read1": 97,
-    "input_read2": null,
-    "quality_trimmed": null,
-    "quality_trimmed_read1": null,
-    "quality_trimmed_read2": null,
-    "poly_a_trimmed": null,
-    "poly_a_trimmed_read1": null,
-    "poly_a_trimmed_read2": null,
-    "output": 35,
-    "output_read1": 35,
-    "output_read2": null
-  },
-  "adapters_read1": [
-    {
-      "name": "1",
-      "total_matches": 5,
-      "on_reverse_complement": null,
-      "linked": false,
-      "five_prime_end": null,
-      "three_prime_end": {
-        "type": "regular_three_prime",
-        "sequence": "AAAGATG",
-        "error_rate": 0.1,
-        "indels": true,
-        "error_lengths": [7],
-        "matches": 5,
-        "adjacent_bases": {
-          "A": 0,
-          "C": 0,
-          "G": 5,
-          "T": 0,
-          "": 0
-        },
-        "dominant_adjacent_base": null,
-        "trimmed_lengths": [
-          {"len": 7, "expect": 0.0, "counts": [1]},
-          {"len": 12, "expect": 0.0, "counts": [1]},
-          {"len": 14, "expect": 0.0, "counts": [2]},
-          {"len": 15, "expect": 0.0, "counts": [1]}
-        ]
-      }
-    }
-  ],
-  "adapters_read2": null,
-  "poly_a_trimmed_read1": null,
-  "poly_a_trimmed_read2": null
-}