Mercurial > repos > lparsons > cutadapt
diff test-data/cutadapt_rest.json @ 39:fe74900d6dc7 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit a5b6cb44f81abe57a4269bded1fa4d41f462f9d5
author | iuc |
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date | Fri, 17 May 2024 13:32:03 +0000 |
parents | b1c926deaa2d |
children |
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--- a/test-data/cutadapt_rest.json Mon Apr 15 06:31:32 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,90 +0,0 @@ -{ - "tag": "Cutadapt report", - "schema_version": [0, 1], - "cutadapt_version": "3.5", - "python_version": "3.9.7", - "command_line_arguments": [ - "-j=1", - "--json", - "stats.json", - "-a", - "AAAGATG", - "--rest-file=rest_output.fa", - "--output=out1.fa", - "--error-rate=0.1", - "--times=1", - "--overlap=3", - "--action=trim", - "cutadapt_rest_fa.fa" - ], - "cores": 1, - "input": { - "path1": "cutadapt_rest_fa.fa", - "path2": null, - "paired": false - }, - "read_counts": { - "input": 5, - "filtered": { - "too_short": null, - "too_long": null, - "too_many_n": null, - "too_many_expected_errors": null, - "casava_filtered": null, - "discard_trimmed": null, - "discard_untrimmed": null - }, - "output": 5, - "reverse_complemented": null, - "read1_with_adapter": 5, - "read2_with_adapter": null - }, - "basepair_counts": { - "input": 97, - "input_read1": 97, - "input_read2": null, - "quality_trimmed": null, - "quality_trimmed_read1": null, - "quality_trimmed_read2": null, - "poly_a_trimmed": null, - "poly_a_trimmed_read1": null, - "poly_a_trimmed_read2": null, - "output": 35, - "output_read1": 35, - "output_read2": null - }, - "adapters_read1": [ - { - "name": "1", - "total_matches": 5, - "on_reverse_complement": null, - "linked": false, - "five_prime_end": null, - "three_prime_end": { - "type": "regular_three_prime", - "sequence": "AAAGATG", - "error_rate": 0.1, - "indels": true, - "error_lengths": [7], - "matches": 5, - "adjacent_bases": { - "A": 0, - "C": 0, - "G": 5, - "T": 0, - "": 0 - }, - "dominant_adjacent_base": null, - "trimmed_lengths": [ - {"len": 7, "expect": 0.0, "counts": [1]}, - {"len": 12, "expect": 0.0, "counts": [1]}, - {"len": 14, "expect": 0.0, "counts": [2]}, - {"len": 15, "expect": 0.0, "counts": [1]} - ] - } - } - ], - "adapters_read2": null, - "poly_a_trimmed_read1": null, - "poly_a_trimmed_read2": null -}