Mercurial > repos > lparsons > cutadapt
view test-data/cutadapt_rest.json @ 36:64172f1c1202 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit f0294a3e33257aee83aa7c507d2abddccebf0239
author | iuc |
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date | Thu, 04 Jan 2024 18:44:12 +0000 |
parents | 9845c649f41b |
children |
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{ "tag": "Cutadapt report", "schema_version": [0, 1], "cutadapt_version": "3.5", "python_version": "3.9.7", "command_line_arguments": [ "-j=1", "--json", "stats.json", "-a", "AAAGATG", "--rest-file=rest_output.fa", "--output=out1.fa", "--error-rate=0.1", "--times=1", "--overlap=3", "--action=trim", "cutadapt_rest_fa.fa" ], "cores": 1, "input": { "path1": "cutadapt_rest_fa.fa", "path2": null, "paired": false }, "read_counts": { "input": 5, "filtered": { "too_short": null, "too_long": null, "too_many_n": null, "too_many_expected_errors": null, "casava_filtered": null, "discard_trimmed": null, "discard_untrimmed": null }, "output": 5, "reverse_complemented": null, "read1_with_adapter": 5, "read2_with_adapter": null }, "basepair_counts": { "input": 97, "input_read1": 97, "input_read2": null, "quality_trimmed": null, "quality_trimmed_read1": null, "quality_trimmed_read2": null, "poly_a_trimmed": null, "poly_a_trimmed_read1": null, "poly_a_trimmed_read2": null, "output": 35, "output_read1": 35, "output_read2": null }, "adapters_read1": [ { "name": "1", "total_matches": 5, "on_reverse_complement": null, "linked": false, "five_prime_end": null, "three_prime_end": { "type": "regular_three_prime", "sequence": "AAAGATG", "error_rate": 0.1, "indels": true, "error_lengths": [7], "matches": 5, "adjacent_bases": { "A": 0, "C": 0, "G": 5, "T": 0, "": 0 }, "dominant_adjacent_base": null, "trimmed_lengths": [ {"len": 7, "expect": 0.0, "counts": [1]}, {"len": 12, "expect": 0.0, "counts": [1]}, {"len": 14, "expect": 0.0, "counts": [2]}, {"len": 15, "expect": 0.0, "counts": [1]} ] } } ], "adapters_read2": null, "poly_a_trimmed_read1": null, "poly_a_trimmed_read2": null }