Mercurial > repos > lparsons > fastx_barcode_splitter_enhanced
diff fastx_barcode_splitter.xml @ 2:32304398ef67 draft
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit c3b0be52079831f6ae58ff64e42d8ff54ce501e4
| author | lparsons |
|---|---|
| date | Fri, 13 Nov 2015 12:43:14 -0500 |
| parents | b7b3d008e2d3 |
| children | e7b7cdc1834d |
line wrap: on
line diff
--- a/fastx_barcode_splitter.xml Tue Oct 27 11:47:52 2015 -0400 +++ b/fastx_barcode_splitter.xml Fri Nov 13 12:43:14 2015 -0500 @@ -1,7 +1,7 @@ -<tool id="cshl_princeton_fastx_barcode_splitter" version="1.1" name="Barcode Splitter" force_history_refresh="True"> +<tool id="cshl_princeton_fastx_barcode_splitter" version="1.1" name="Barcode Splitter"> <description></description> <command interpreter="bash"><![CDATA[ -fastx_barcode_splitter_galaxy_wrapper.sh $BARCODE $input "primary_$output.id" "$__new_file_path__" $input.extension --mismatches $mismatches --partial $partial +fastx_barcode_splitter_galaxy_wrapper.sh $BARCODE $input "split/" $input.extension --mismatches $mismatches --partial $partial #if $refBarcodeLocation.barcodeLocation == "idxfile": --idxfile $refBarcodeLocation.idxfile #else: @@ -39,7 +39,9 @@ </inputs> <outputs> - <data format="html" name="output" /> + <data format="html" name="output"> + <discover_datasets pattern="__designation_and_ext__" directory="split" visible="true" label="${tool.name}: ${designation}"/> + </data> </outputs> <tests> @@ -50,7 +52,13 @@ <param name="barcodeLocation" value="bol" /> <param name="mismatches" value="2" /> <param name="partial" value="0" /> - <output name="output" file="fastx_barcode_splitter1.out" /> + <output name="output" file="fastx_barcode_splitter1.out"> + <discovered_dataset designation="BC1" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC1.out" /> + <discovered_dataset designation="BC2" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC2.out" /> + <discovered_dataset designation="BC3" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC3.out" /> + <discovered_dataset designation="BC4" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC4.out" /> + <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> + </output> </test> </tests> @@ -85,7 +93,7 @@ <!-- FASTX-barcode-splitter is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) --> <citations> - <citation type="bibtex"> + <citation type="bibtex"> @misc{gordon_fastx-toolkit_????, title = {{FASTX}-{Toolkit}}, url = {http://hannonlab.cshl.edu/fastx_toolkit/index.html},