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comparison freebayes.xml @ 5:c1f3ee7b5003 draft

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Change requirement tags to package type and added version
author Lance Parsons <lparsons@princeton.edu>
date Fri, 25 May 2012 13:09:44 -0400
parents 0df882474701
children 73e1e4d0b419
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4:0df882474701 5:c1f3ee7b5003
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="freebayes_wrapper_princeton" name="Call SNPS with Freebayes (beta)" version="0.9.0.a"> 2 <tool id="freebayes_wrapper_princeton" name="Call SNPS with Freebayes (beta)" version="0.9.0.a">
3 <requirements> 3 <requirements>
4 <requirement type="binary">freebayes</requirement> 4 <requirement type="package" version="0.9.0">freebayes</requirement>
5 <requirement type="binary">samtools</requirement> 5 <requirement type="package">samtools</requirement>
6 </requirements> 6 </requirements>
7 <description>Bayesian genetic variant detector</description> 7 <description>Bayesian genetic variant detector</description>
8 <version_string>freebayes -h | grep [Vv]ersion</version_string> 8 <version_string>freebayes -h | grep [Vv]ersion</version_string>
9 <command> 9 <command>
10 if [ "`freebayes -h | grep [Vv]ersion | awk '{print \$2}'`" != "0.9.0" ]; then 10 if [ "`freebayes -h | grep [Vv]ersion | awk '{print \$2}'`" != "0.9.0" ]; then