Mercurial > repos > lparsons > freebayes
diff freebayes.xml @ 3:72bdc513a54a
Fixed functional test and added required test files
Fixed version number of tool to match supported freebayes version
| author | Lance Parsons <lparsons@princeton.edu> |
|---|---|
| date | Thu, 22 Dec 2011 14:09:55 -0500 |
| parents | c70c9dc2efb7 |
| children | 0df882474701 |
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--- a/freebayes.xml Thu Dec 22 12:03:14 2011 -0500 +++ b/freebayes.xml Thu Dec 22 14:09:55 2011 -0500 @@ -161,10 +161,11 @@ </outputs> <tests> <test> - <param name="reference" ftype="fasta" value="mosaik_test_ref.fasta"/> + <param name="refGenomeSource" value="history"/> + <param name="ownFile" ftype="fasta" value="mosaik_test_ref.fasta"/> <param name="bamfile" ftype="bam" value="freebayes_in.bam"/> <param name="source_select" value="pre_set"/> - <output name="output" file="freebayes_out.vcf" lines_diff="4"/> + <output name="output" file="freebayes_princeton_out.vcf" lines_diff="4"/> </test> </tests> <help>