Mercurial > repos > lparsons > htseq_count

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Updated HTSeq package to version 0.6.1, fixed input format string, updated dependency definitions
author lparsons
date Fri, 11 Apr 2014 15:05:28 -0400
parents 30bb8acb77a4
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1 htseq-count wrapper for Galaxy
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2 ==============================
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3
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4 Galaxy wrapper for
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5 [htseq-count](http://www-huber.embl.de/users/anders/HTSeq/doc/count.html)
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6 script from python
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7 [HTSeq](http://www-huber.embl.de/users/anders/HTSeq/doc/index.html) package.
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9 Installation
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10 ------------
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12 Installation directly from the [Galaxy
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13 Toolshed](http://toolshed.g2.bx.psu.edu/view/lparsons/htseq_count) is
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14 recommended.
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16 Development
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17 -----------
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18
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19 Repository-Maintainer: Lance Parsons <lparsons@princeton.edu>
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20
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21 Repository-Development: <https://bitbucket.org/lance_parsons/htseq_count_galaxy_wrapper>
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24 License
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25 -------
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26
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27 Copyright (c) 2012-2014, Lance R. Parsons <lparsons@princeton.edu>
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28 All rights reserved.
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29
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30 Licensed under the BSD 2-Clause License: <http://opensource.org/licenses/BSD-2-Clause>
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31
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32 Redistribution and use in source and binary forms, with or without
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33 modification, are permitted provided that the following conditions are met:
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34
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35 * Redistributions of source code must retain the above copyright notice,
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36 this list of conditions and the following disclaimer.
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37
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38 * Redistributions in binary form must reproduce the above copyright notice,
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39 this list of conditions and the following disclaimer in the documentation
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40 and/or other materials provided with the distribution.
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41
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42 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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43 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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44 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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45 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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46 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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47 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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48 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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49 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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50 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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51 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.