Mercurial > repos > lparsons > htseq_count

comparison tool_dependencies.xml @ 1:14e18dc9ed13

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Build htseq package from source
author Lance Parsons <lparsons@princeton.edu>
date Tue, 04 Sep 2012 14:00:14 -0400
parents 3fdeebd7e710
children 265ca0f35789
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0:3fdeebd7e710 1:14e18dc9ed13
6 <action type="download_by_url">http://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.3p9.tar.gz</action> 6 <action type="download_by_url">http://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.3p9.tar.gz</action>
7 <action type="shell_command">mkdir -p $INSTALL_DIR/lib/python</action> 7 <action type="shell_command">mkdir -p $INSTALL_DIR/lib/python</action>
8 <action type="set_environment"> 8 <action type="set_environment">
9 <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable> 9 <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
10 </action> 10 </action>
11 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py build</action>
11 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> 12 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
12 <action type="set_environment"> 13 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action> 15 </action>
15 </actions> 16 </actions>