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comparison tool_dependencies.xml @ 10:5d969cb56112

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Version 0.3 - paried-end sorting is now built-in (uses Picard tools)
author lparsons
date Fri, 07 Dec 2012 14:35:44 -0500
parents 971e20519fb8
children 62a1de8c8aae
comparison
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9:971e20519fb8 10:5d969cb56112
53 </install> 53 </install>
54 <readme> 54 <readme>
55 Compiling SAMtools requires the ncurses and zlib development libraries. 55 Compiling SAMtools requires the ncurses and zlib development libraries.
56 </readme> 56 </readme>
57 </package> 57 </package>
58 <package name="picard" version="1.56.0">
59 <install version="1.0">
60 <actions>
61 <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
62 <action type="move_directory_files">
63 <source_directory>picard-tools-1.56</source_directory>
64 <destination_directory>$INSTALL_DIR/jars</destination_directory>
65 </action>
66 <action type="set_environment">
67 <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
68 </action>
69 </actions>
70 </install>
71 <readme>
72 </readme>
73 </package>
58 </tool_dependency> 74 </tool_dependency>