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comparison htseq-count.xml @ 12:62a1de8c8aae

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Updated HTSEQ package to version 0.5.4p1, attempted to fix galaxy install where lib64 directory does not exist
author lparsons
date Mon, 11 Mar 2013 12:44:45 -0400
parents f320093f1e8e
children 30bb8acb77a4
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11:f320093f1e8e 12:62a1de8c8aae
1 <tool id="htseq_count" name="htseq-count" version="0.3"> 1 <tool id="htseq_count" name="htseq-count" version="0.3.1">
2 <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description> 2 <description> - Count aligned reads in a BAM file that overlap features in a GFF file</description>
3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command> 3 <version_command>htseq-count -h | grep version | sed 's/^\(.*\)*\(version .*\)\./\2/'</version_command>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.6.2">numpy</requirement> 5 <requirement type="package" version="1.6.2">numpy</requirement>
6 <requirement type="package" version="0.5.3p9">htseq</requirement> 6 <requirement type="package" version="0.5.4p1">htseq</requirement>
7 <requirement type="package" version="0.1.18">samtools</requirement> 7 <requirement type="package" version="0.1.18">samtools</requirement>
8 <requirement type="package" version="1.56.0">picard</requirement> 8 <requirement type="package" version="1.56.0">picard</requirement>
9 </requirements> 9 </requirements>
10 <command> 10 <command>
11 ##set up input files 11 ##set up input files