Mercurial > repos > lparsons > htseq_count

diff tool_dependencies.xml @ 16:227f9d3f0e32 draft

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Updated HTSeq package to version 0.6.1, fixed input format string, updated dependency definitions
author lparsons
date Fri, 11 Apr 2014 15:05:28 -0400
parents 265ca0f35789
children d5edaf8dc974
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jan 27 14:12:46 2014 -0500
+++ b/tool_dependencies.xml	Fri Apr 11 15:05:28 2014 -0400
@@ -2,24 +2,20 @@
 <tool_dependency>
 
     <package name="numpy" version="1.7.1">
-        <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
-    </package>
-
-    <package name="picard" version="1.56.0">
-        <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 
-    <package name="htseq" version="0.5.4p5">
+    <package name="htseq" version="0.6.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p5.tar.gz</action>
+                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.7.1" />
                    </repository>
                 </action>