# HG changeset patch
# User lparsons
# Date 1406124558 14400
# Node ID 367d6fedfe41fc9dd1971ccc5b9a42960c580a88

Initial upload

diff -r 000000000000 -r 367d6fedfe41 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jul 23 10:09:18 2014 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="rseqc" version="2.3.9">
+        <install version = "1.0">
+            <actions>
+                <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.3.9.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action> 
+                <action type="make_directory">$INSTALL_DIR/lib64/python</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            RSeQC version 2.3.9, documentation available at http://rseqc.sourceforge.net/.
+            Requires gcc and python 2.7.
+        </readme>
+    </package>
+</tool_dependency>