Mercurial > repos > lparsons > package_rseqc_2_4

annotate tool_dependencies.xml @ 0:8e7baa602cec draft default tip

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Initial version
author lparsons
date Fri, 26 Sep 2014 15:02:50 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="rseqc" version="2.4">
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4 <install version = "1.0">
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5 <actions>
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6 <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.4.tar.gz</action>
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7 <!-- <action type="set_environment_for_install">
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8 <repository name="package_r_3_0_3" owner="iuc">
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9 <package name="R" version="3.0.3" />
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10 </repository>
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11 <repository name="package_numpy_1_7" owner="iuc">
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12 <package name="numpy" version="1.7" />
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13 </repository>
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14 </action>
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15 -->
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16 <!-- Not sure why these must be made apriori, but install fails otherwise -->
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17 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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18 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
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19 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
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20 <action type="set_environment">
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21 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
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22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 <readme>
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27 RSeQC version 2.4, documentation available at http://rseqc.sourceforge.net/.
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28 Requires gcc and python 2.7.
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29 </readme>
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30 </package>
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31 </tool_dependency>