Mercurial > repos > lparsons > package_rseqc_2_4

comparison tool_dependencies.xml @ 0:8e7baa602cec draft default tip

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Initial version
author lparsons
date Fri, 26 Sep 2014 15:02:50 -0400
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-1:000000000000 0:8e7baa602cec
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="rseqc" version="2.4">
4 <install version = "1.0">
5 <actions>
6 <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.4.tar.gz</action>
7 <!-- <action type="set_environment_for_install">
8 <repository name="package_r_3_0_3" owner="iuc">
9 <package name="R" version="3.0.3" />
10 </repository>
11 <repository name="package_numpy_1_7" owner="iuc">
12 <package name="numpy" version="1.7" />
13 </repository>
14 </action>
15 -->
16 <!-- Not sure why these must be made apriori, but install fails otherwise -->
17 <action type="make_directory">$INSTALL_DIR/lib/python</action>
18 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
19 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
20 <action type="set_environment">
21 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
23 </action>
24 </actions>
25 </install>
26 <readme>
27 RSeQC version 2.4, documentation available at http://rseqc.sourceforge.net/.
28 Requires gcc and python 2.7.
29 </readme>
30 </package>
31 </tool_dependency>