Mercurial > repos > lparsons > package_rseqc_2_4
changeset 0:8e7baa602cec draft default tip
Initial version
| author | lparsons |
|---|---|
| date | Fri, 26 Sep 2014 15:02:50 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 31 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Sep 26 15:02:50 2014 -0400 @@ -0,0 +1,31 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="rseqc" version="2.4"> + <install version = "1.0"> + <actions> + <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.4.tar.gz</action> + <!-- <action type="set_environment_for_install"> + <repository name="package_r_3_0_3" owner="iuc"> + <package name="R" version="3.0.3" /> + </repository> + <repository name="package_numpy_1_7" owner="iuc"> + <package name="numpy" version="1.7" /> + </repository> + </action> + --> + <!-- Not sure why these must be made apriori, but install fails otherwise --> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="make_directory">$INSTALL_DIR/lib64/python</action> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> + <action type="set_environment"> + <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + RSeQC version 2.4, documentation available at http://rseqc.sourceforge.net/. + Requires gcc and python 2.7. + </readme> + </package> +</tool_dependency>