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planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 394834f8f34909961cfbf6252fefbdc63342d78d
author lparsons
date Mon, 13 Jul 2015 11:45:51 -0400
parents b9e7569a4438
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0:b9e7569a4438 1:a51942c74761
1 == sam-stats Galaxy Wrapper == 1 == ea-utils Galaxy Wrapper ==
2 2
3 This is a Galaxy wrapper for the sam-stats tool from ea-utils suite. 3 This is a Galaxy wrapper for the sam-stats tools from the ea-utils suite.
4 4
5 ** Installation ** 5 ** Installation **
6 6
7 Installation from a tool shed provides the necessary tool dependencies. 7 Installation from a tool shed provides the necessary tool dependencies.
8 8
9 Otherwise, make sure sam-stats is in the path. 9 Otherwise, make sure fastq-join and sam-stats are in the path.
10 Move the test data files to your galaxy root test-data. 10 Move the test data files to your galaxy root test-data.
11 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them. 11 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
12 Restart the Galaxy server. 12 Restart the Galaxy server.
13 13
14 ** Attribution ** 14 ** Attribution **
15 15
16 The ea-utils package and associated documentation can be found at: http://code.google.com/p/ea-utils/ 16 The ea-utils package and associated documentation can be found at: http://code.google.com/p/ea-utils/
17 17
18 The galaxy wrapper code was written by Lance Parsons (lparsons@princeton.edu), Lewis-Sigler Institute for Integrative Genomics, Princeton University. 18 The galaxy wrapper code was written by Lance Parsons (lparsons@princeton.edu), Lewis-Sigler Institute for Integrative Genomics, Princeton University.
19 The code is housed on BitBucket at: https://bitbucket.org/lance_parsons/ea_utils_galaxy_wrapper