comparison PsiCLASS-1.0.2/samtools-0.1.19/INSTALL @ 0:903fc43d6227 draft default tip

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author lsong10
date Fri, 26 Mar 2021 16:52:45 +0000
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1 System Requirements
2 ===================
3
4 SAMtools depends on the zlib library <http://www.zlib.net>. Version 1.2.3+ is
5 preferred and with 1.2.3+ you can compile razip and use it to compress a FASTA
6 file. SAMtools' faidx is able to index a razip-compressed FASTA file to save
7 diskspace. Older zlib also works with SAMtools, but razip cannot be compiled.
8
9 The text-based viewer (tview) requires the GNU ncurses library
10 <http://www.gnu.org/software/ncurses/>, which comes with Mac OS X and most of
11 the modern Linux/Unix distributions. If you do not have this library installed,
12 you can still compile the rest of SAMtools by manually changing:
13 `-D_CURSES_LIB=1' to `-D_CURSES_LIB=0' at the line starting with `DFLAGS=', and
14 comment out the line starting with `LIBCURSES='.
15
16
17 Compilation
18 ===========
19
20 Type `make' to compile samtools. If you have zlib >= 1.2.2.1, you can compile
21 razip with `make razip'.
22
23
24 Installation
25 ============
26
27 Copy `samtools', `bcftools/bcftools' and other executables/scripts in `misc' to
28 a location you want (e.g. a directory in your $PATH). You may also copy
29 `samtools.1' and `bcftools/bcftools.1' to a directory in your $MANPATH such
30 that the `man' command may find the manual.