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comparison PsiCLASS-1.0.2/samtools-0.1.19/INSTALL @ 0:903fc43d6227 draft default tip
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| author | lsong10 |
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| date | Fri, 26 Mar 2021 16:52:45 +0000 |
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| -1:000000000000 | 0:903fc43d6227 |
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| 1 System Requirements | |
| 2 =================== | |
| 3 | |
| 4 SAMtools depends on the zlib library <http://www.zlib.net>. Version 1.2.3+ is | |
| 5 preferred and with 1.2.3+ you can compile razip and use it to compress a FASTA | |
| 6 file. SAMtools' faidx is able to index a razip-compressed FASTA file to save | |
| 7 diskspace. Older zlib also works with SAMtools, but razip cannot be compiled. | |
| 8 | |
| 9 The text-based viewer (tview) requires the GNU ncurses library | |
| 10 <http://www.gnu.org/software/ncurses/>, which comes with Mac OS X and most of | |
| 11 the modern Linux/Unix distributions. If you do not have this library installed, | |
| 12 you can still compile the rest of SAMtools by manually changing: | |
| 13 `-D_CURSES_LIB=1' to `-D_CURSES_LIB=0' at the line starting with `DFLAGS=', and | |
| 14 comment out the line starting with `LIBCURSES='. | |
| 15 | |
| 16 | |
| 17 Compilation | |
| 18 =========== | |
| 19 | |
| 20 Type `make' to compile samtools. If you have zlib >= 1.2.2.1, you can compile | |
| 21 razip with `make razip'. | |
| 22 | |
| 23 | |
| 24 Installation | |
| 25 ============ | |
| 26 | |
| 27 Copy `samtools', `bcftools/bcftools' and other executables/scripts in `misc' to | |
| 28 a location you want (e.g. a directory in your $PATH). You may also copy | |
| 29 `samtools.1' and `bcftools/bcftools.1' to a directory in your $MANPATH such | |
| 30 that the `man' command may find the manual. |