diff PsiCLASS-1.0.2/samtools-0.1.19/errmod.h @ 0:903fc43d6227 draft default tip

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author lsong10
date Fri, 26 Mar 2021 16:52:45 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PsiCLASS-1.0.2/samtools-0.1.19/errmod.h	Fri Mar 26 16:52:45 2021 +0000
@@ -0,0 +1,24 @@
+#ifndef ERRMOD_H
+#define ERRMOD_H
+
+#include <stdint.h>
+
+struct __errmod_coef_t;
+
+typedef struct {
+	double depcorr;
+	struct __errmod_coef_t *coef;
+} errmod_t;
+
+errmod_t *errmod_init(float depcorr);
+void errmod_destroy(errmod_t *em);
+
+/*
+	n: number of bases
+	m: maximum base
+	bases[i]: qual:6, strand:1, base:4
+	q[i*m+j]: phred-scaled likelihood of (i,j)
+ */
+int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);
+
+#endif