Mercurial > repos > lsong10 > psiclass
diff PsiCLASS-1.0.2/samtools-0.1.19/INSTALL @ 0:903fc43d6227 draft default tip
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author | lsong10 |
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date | Fri, 26 Mar 2021 16:52:45 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PsiCLASS-1.0.2/samtools-0.1.19/INSTALL Fri Mar 26 16:52:45 2021 +0000 @@ -0,0 +1,30 @@ +System Requirements +=================== + +SAMtools depends on the zlib library <http://www.zlib.net>. Version 1.2.3+ is +preferred and with 1.2.3+ you can compile razip and use it to compress a FASTA +file. SAMtools' faidx is able to index a razip-compressed FASTA file to save +diskspace. Older zlib also works with SAMtools, but razip cannot be compiled. + +The text-based viewer (tview) requires the GNU ncurses library +<http://www.gnu.org/software/ncurses/>, which comes with Mac OS X and most of +the modern Linux/Unix distributions. If you do not have this library installed, +you can still compile the rest of SAMtools by manually changing: +`-D_CURSES_LIB=1' to `-D_CURSES_LIB=0' at the line starting with `DFLAGS=', and +comment out the line starting with `LIBCURSES='. + + +Compilation +=========== + +Type `make' to compile samtools. If you have zlib >= 1.2.2.1, you can compile +razip with `make razip'. + + +Installation +============ + +Copy `samtools', `bcftools/bcftools' and other executables/scripts in `misc' to +a location you want (e.g. a directory in your $PATH). You may also copy +`samtools.1' and `bcftools/bcftools.1' to a directory in your $MANPATH such +that the `man' command may find the manual.